Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm

causetext | Translation list of COD codes |

condprob | Conditional probability table used by InterVA-4 |

condprobnum | Conditional probability values used by InterVA-4 |

csmf.diag | Convergence test for fitted InSilico model |

extract.prob | Obtain conditional probabilities from training data |

get.indiv | Get individual COD probabilities from InSilicoVA Model Fits |

indivplot | plot aggregated COD distribution |

insilico | Implement InSilicoVA methods |

insilico.fit | Implement InSilicoVA methods with more flexible customization |

insilico.train | Modified InSilicoVA methods with training data |

java_message | Message to set heap size for Java |

mapICD | Map ICD-10 codes into the WHO 2016 cause list |

physician_debias | Implement physician debias algorithm |

plot.insilico | plot CSMF from a "insilico" object |

print.insilico | Print method for summarizing InSilicoVA Model Fits |

print.insilico_summary | Print method for summarizing InSilicoVA Model Fits |

probbase | Conditional probability of InterVA4 |

probbase3 | Conditional probability of InterVA4.03 |

RandomPhysician | 100 records of Sample Input together with two simulated... |

RandomVA1 | 1000 records of Sample Input |

RandomVA2 | 100 records of Sample Input |

SampleCategory | Correspondence between InterVA causes and the physician coded... |

SamplePhysician | 100 records of Sample debiased physician codes |

stackplot | plot grouped CSMF from a "insilico" object |

summary.insilico | Summarizing InSilicoVA Model Fits |

updateIndiv | Update individual COD probabilities from InSilicoVA Model... |

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