CancerTypeAbbr: Print abbreviations of cancer types with known iDMCs.

In InfiniumPurify: Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis

Description

Print tumor types and their abbreviations with known informative DMCs.

Usage

CancerTypeAbbr()

Arguments

None.

Author(s)

Xiaoqi Zheng [e-mail].

References

X. Zheng, N. Zhang, H.J. Wu and H. Wu, Estimating and accounting for tumor purity in the analysis of DNA methylation data from cancer studies. Genome biology, in revision.

Examples

data(abbr)
CancerTypeAbbr()

Example output

Loading required package: matrixStats
   Abbreviation
1           ACC
2          BLCA
3          BRCA
4          CESC
5          CHOL
6          COAD
7          DLBC
8          ESCA
9           GBM
10         HNSC
11         KICH
12         KIRC
13         KIRP
14         LAML
15          LGG
16         LIHC
17         LUAD
18         LUSC
19         MESO
20           OV
21         PAAD
22         PCPG
23         PRAD
24         SARC
25         SKCM
26         STAD
27         TGCT
28         THCA
29         THYM
30         UCEC
31          UCS
32          UVM
                                                         Cancer.type
1                                          Adrenocortical carcinoma 
2                                      Bladder Urothelial Carcinoma 
3                                         Breast invasive carcinoma 
4  Cervical squamous cell carcinoma and endocervical adenocarcinoma 
5                                                Cholangiocarcinoma 
6                                              Colon adenocarcinoma 
7                    Lymphoid Neoplasm Diffuse Large B-cell Lymphoma
8                                              Esophageal carcinoma 
9                                           Glioblastoma multiforme 
10                            Head and Neck squamous cell carcinoma 
11                                               Kidney Chromophobe 
12                                Kidney renal clear cell carcinoma 
13                            Kidney renal papillary cell carcinoma 
14                                           Acute Myeloid Leukemia 
15                                         Brain Lower Grade Glioma 
16                                   Liver hepatocellular carcinoma 
17                                              Lung adenocarcinoma 
18                                     Lung squamous cell carcinoma 
19                                                     Mesothelioma 
20                                Ovarian serous cystadenocarcinoma 
21                                        Pancreatic adenocarcinoma 
22                               Pheochromocytoma and Paraganglioma 
23                                          Prostate adenocarcinoma 
24                                                          Sarcoma 
25                                          Skin Cutaneous Melanoma 
26                                           Stomach adenocarcinoma 
27                                      Testicular Germ Cell Tumors 
28                                                Thyroid carcinoma 
29                                                          Thymoma 
30                             Uterine Corpus Endometrial Carcinoma 
31                                           Uterine Carcinosarcoma 
32                                                   Uveal Melanoma 

InfiniumPurify documentation built on May 1, 2019, 9:23 p.m.