InformativeCensoring: Multiple Imputation for Informative Censoring

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Multiple Imputation for Informative Censoring. This package implements two methods. Gamma Imputation from Jackson et al. (2014) <DOI:10.1002/sim.6274> and Risk Score Imputation from Hsu et al. (2009) <DOI:10.1002/sim.3480>.

Author
David Ruau [aut], Nikolas Burkoff [aut], Jonathan Bartlett [aut, cre], Dan Jackson [aut], Edmund Jones [aut], Martin Law [aut], Paul Metcalfe [aut]
Date of publication
2016-08-11 18:40:16
Maintainer
Jonathan Bartlett <jonathan.bartlett1@astrazeneca.com>
License
GPL (>= 2) | file LICENSE
Version
0.3.4
URLs

View on CRAN

Man pages

col.headings
Specify the columns of the data frame required by score...
cox.zph
Test Cox proportional hazards assumption
ExtractSingle
Extract a single risk score/gamma imputed data set/model fit
gammaImpute
Perform gamma-Imputation for a given data set
GammaImputedData.object
'GammaImputedData' object
GammaImputedSet.object
'GammaImputedSet' object
GammaStatList.object
'GammaStatList' object
GammaStat.object
'GammaStat' object
ImputeStat
S3 generic to fit model(s) to risk score/gamma Imputed...
InformativeCensoring-package
Perform methods of multiple imputation for time to event data
MakeTimeDepScore
Create a valid 'ScoreTD' object
NN.options
Create a list of options which control the nearest neighbour...
ScoreImpute
Perform risk score multiple imputation method
ScoreImputedData.object
'ScoreImputedData' object
ScoreImputedSet.object
'ScoreImputedSet' object
ScoreInd
Simulated time to event data with 5 time independent...
ScoreStatList.object
ScoreStatList
ScoreStat.object
ScoreStat object
ScoreStatSet
S3 generic to create a 'ScoreStatSet' object
ScoreStatSet.object
An object which contains the test statistic and estimators...
ScoreTD.object
A 'ScoreTD' object
ScoreTimeDep
Simulated time dependent variables for time to event data
summary.ScoreStatSet
Summary object of 'ScoreStatSet' object

Files in this package

InformativeCensoring
InformativeCensoring/inst
InformativeCensoring/inst/doc
InformativeCensoring/inst/doc/gamma_imputation_Jackson_2014.R
InformativeCensoring/inst/doc/risk_score_imputation_Hsu_2009.Rnw
InformativeCensoring/inst/doc/risk_score_imputation_Hsu_2009.pdf
InformativeCensoring/inst/doc/risk_score_imputation_Hsu_2009.R
InformativeCensoring/inst/doc/gamma_imputation_Jackson_2014.Rnw
InformativeCensoring/inst/doc/gamma_imputation_Jackson_2014.pdf
InformativeCensoring/inst/validation
InformativeCensoring/inst/validation/score.R
InformativeCensoring/inst/validation/jackson_simulation.Rmd
InformativeCensoring/inst/validation/jackson_simulation.pdf
InformativeCensoring/tests
InformativeCensoring/tests/system_description.Rnw
InformativeCensoring/tests/testthat.R
InformativeCensoring/tests/testthat
InformativeCensoring/tests/testthat/test-internalGamma.R
InformativeCensoring/tests/testthat/test-gammaImputedata.R
InformativeCensoring/tests/testthat/parallel.R
InformativeCensoring/tests/testthat/test-validation.R
InformativeCensoring/tests/testthat/gamma_test.rda
InformativeCensoring/tests/testthat/test-scoreStatSet.R
InformativeCensoring/tests/testthat/generate_test_data_gamma.R
InformativeCensoring/tests/testthat/test-scoreExtract.R
InformativeCensoring/tests/testthat/test-scoreStat.R
InformativeCensoring/tests/testthat/test-options.R
InformativeCensoring/tests/testthat/test-scoreSystem.R
InformativeCensoring/tests/testthat/test-timedependent.R
InformativeCensoring/tests/testthat/test-gammaStat.R
InformativeCensoring/tests/testthat/test-validationGamma.R
InformativeCensoring/tests/testthat/test-internalScore.R
InformativeCensoring/NAMESPACE
InformativeCensoring/data
InformativeCensoring/data/ScoreTimeDep.rda
InformativeCensoring/data/ScoreInd.rda
InformativeCensoring/R
InformativeCensoring/R/scoreImputedSet.R
InformativeCensoring/R/parallel.R
InformativeCensoring/R/gammaStat.R
InformativeCensoring/R/timedependent.R
InformativeCensoring/R/validationGamma.R
InformativeCensoring/R/InformativeCensoring-package.R
InformativeCensoring/R/validation.R
InformativeCensoring/R/generics.R
InformativeCensoring/R/scoreImputedData.R
InformativeCensoring/R/dataDescription.R
InformativeCensoring/R/scoreStat.R
InformativeCensoring/R/internalGamma.R
InformativeCensoring/R/internalScore.R
InformativeCensoring/R/scoreStatSet.R
InformativeCensoring/R/options.R
InformativeCensoring/R/gammaImputeData.R
InformativeCensoring/R/tests.R
InformativeCensoring/vignettes
InformativeCensoring/vignettes/risk_score_imputation_Hsu_2009.Rnw
InformativeCensoring/vignettes/bibliography.bib
InformativeCensoring/vignettes/gamma_imputation_Jackson_2014.Rnw
InformativeCensoring/README.md
InformativeCensoring/MD5
InformativeCensoring/build
InformativeCensoring/build/vignette.rds
InformativeCensoring/DESCRIPTION
InformativeCensoring/man
InformativeCensoring/man/InformativeCensoring-package.Rd
InformativeCensoring/man/GammaStat.object.Rd
InformativeCensoring/man/GammaImputedData.object.Rd
InformativeCensoring/man/gammaImpute.Rd
InformativeCensoring/man/summary.ScoreStatSet.Rd
InformativeCensoring/man/ScoreImputedData.object.Rd
InformativeCensoring/man/ScoreStatList.object.Rd
InformativeCensoring/man/NN.options.Rd
InformativeCensoring/man/ImputeStat.Rd
InformativeCensoring/man/ScoreStatSet.object.Rd
InformativeCensoring/man/MakeTimeDepScore.Rd
InformativeCensoring/man/ScoreInd.Rd
InformativeCensoring/man/ScoreTD.object.Rd
InformativeCensoring/man/col.headings.Rd
InformativeCensoring/man/ScoreStatSet.Rd
InformativeCensoring/man/ScoreStat.object.Rd
InformativeCensoring/man/ScoreImputedSet.object.Rd
InformativeCensoring/man/ExtractSingle.Rd
InformativeCensoring/man/cox.zph.Rd
InformativeCensoring/man/ScoreTimeDep.Rd
InformativeCensoring/man/GammaImputedSet.object.Rd
InformativeCensoring/man/ScoreImpute.Rd
InformativeCensoring/man/GammaStatList.object.Rd
InformativeCensoring/LICENSE