InformativeCensoring: Multiple Imputation for Informative Censoring
Version 0.3.4

Multiple Imputation for Informative Censoring. This package implements two methods. Gamma Imputation from Jackson et al. (2014) and Risk Score Imputation from Hsu et al. (2009) .

AuthorDavid Ruau [aut], Nikolas Burkoff [aut], Jonathan Bartlett [aut, cre], Dan Jackson [aut], Edmund Jones [aut], Martin Law [aut], Paul Metcalfe [aut]
Date of publication2016-08-11 18:40:16
MaintainerJonathan Bartlett <jonathan.bartlett1@astrazeneca.com>
LicenseGPL (>= 2) | file LICENSE
Version0.3.4
URL https://github.com/scientific-computing-solutions/InformativeCensoring
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("InformativeCensoring")

Getting started

Package overview
README.md

Popular man pages

cox.zph: Test Cox proportional hazards assumption
ExtractSingle: Extract a single risk score/gamma imputed data set/model fit
GammaStatList.object: 'GammaStatList' object
GammaStat.object: 'GammaStat' object
ImputeStat: S3 generic to fit model(s) to risk score/gamma Imputed...
ScoreImputedData.object: 'ScoreImputedData' object
ScoreStat.object: ScoreStat object
See all...

All man pages Function index File listing

Man pages

col.headings: Specify the columns of the data frame required by score...
cox.zph: Test Cox proportional hazards assumption
ExtractSingle: Extract a single risk score/gamma imputed data set/model fit
gammaImpute: Perform gamma-Imputation for a given data set
GammaImputedData.object: 'GammaImputedData' object
GammaImputedSet.object: 'GammaImputedSet' object
GammaStatList.object: 'GammaStatList' object
GammaStat.object: 'GammaStat' object
ImputeStat: S3 generic to fit model(s) to risk score/gamma Imputed...
InformativeCensoring-package: Perform methods of multiple imputation for time to event data
MakeTimeDepScore: Create a valid 'ScoreTD' object
NN.options: Create a list of options which control the nearest neighbour...
ScoreImpute: Perform risk score multiple imputation method
ScoreImputedData.object: 'ScoreImputedData' object
ScoreImputedSet.object: 'ScoreImputedSet' object
ScoreInd: Simulated time to event data with 5 time independent...
ScoreStatList.object: ScoreStatList
ScoreStat.object: ScoreStat object
ScoreStatSet: S3 generic to create a 'ScoreStatSet' object
ScoreStatSet.object: An object which contains the test statistic and estimators...
ScoreTD.object: A 'ScoreTD' object
ScoreTimeDep: Simulated time dependent variables for time to event data
summary.ScoreStatSet: Summary object of 'ScoreStatSet' object

Functions

CoxMImpute Source code
ExtractSingle Man page Source code
ExtractSingle.GammaImputedSet Man page Source code
ExtractSingle.GammaStatList Man page Source code
ExtractSingle.ScoreImputedSet Man page Source code
ExtractSingle.ScoreStatList Man page Source code
ExtractSingle.default Source code
GammaImputedData.object Man page
GammaImputedSet.object Man page
GammaStat.object Man page
GammaStatList.object Man page
ImputeStat Man page Source code
ImputeStat.GammaImputedData Man page Source code
ImputeStat.GammaImputedSet Man page Source code
ImputeStat.ScoreImputedData Source code
ImputeStat.ScoreImputedSet Man page Source code
ImputeStat.default Source code
InformativeCensoring Man page
InformativeCensoring-package Man page
MakeTimeDepScore Man page Source code
NN.options Man page Source code
ScoreImpute Man page Source code
ScoreImputedData.object Man page
ScoreImputedSet.object Man page
ScoreInd Man page
ScoreStat.object Man page
ScoreStatList.object Man page
ScoreStatSet Man page Source code
ScoreStatSet.default Source code
ScoreStatSet.matrix Source code
ScoreStatSet.object Man page
ScoreTD.object Man page
ScoreTimeDep Man page
SetupStrataBaseHaz Source code
Sfn Source code
TestExponential Source code
TestWeibull Source code
Testcox Source code
Testlogrank Source code
Testsurv Source code
Testsurvdiff Source code
Testwilcoxon Source code
additionalScore.validate Source code
as.vector.ScoreStat Source code
calcDistances Source code
calcscores Source code
checkContiguous Source code
checkPanelling Source code
col.headings Man page Source code
confint.summary.ScoreStatSet Source code
cox.zph Man page Source code
cox.zph.GammaStat Source code
cox.zph.GammaStatList Source code
cox.zph.default Source code
createImputedSet Source code
dummy.col.headings Source code
fitPHmodel Source code
gammaImpute Man page Source code
getCovarFormula Source code
getFormula Source code
getGamma Source code
getLatestTimeCutoff Source code
getResponse Source code
getRiskSet Source code
getTimeDepDataSet Source code
is.valid.call Source code
kmi Source code
mputeStat.internal Source code
mputeTimes Source code
normalize.scores Source code
nternal.is.finite.number Source code
nternal.is.wholenumber Source code
nternalDistances Source code
nternalExtract Source code
nternalImputeStatset Source code
parallelRun Source code
print.GammaStat Source code
print.ScoreStat Source code
print.summary.ScoreStatSet Source code
singleGammaImpute Source code
summary.GammaStatList Source code
summary.ScoreStatList Source code
summary.ScoreStatSet Man page Source code
summary.ScoreStatSet.object Man page
validNNoption Source code
validRHSFormula Source code
validate.Gamma.arguments Source code
validate.Score.Arguments Source code
validate.parallel.arguments Source code
validateDCO.time Source code
validateGammaVal Source code
validcoloption Source code

Files

inst
inst/doc
inst/doc/gamma_imputation_Jackson_2014.R
inst/doc/risk_score_imputation_Hsu_2009.Rnw
inst/doc/risk_score_imputation_Hsu_2009.pdf
inst/doc/risk_score_imputation_Hsu_2009.R
inst/doc/gamma_imputation_Jackson_2014.Rnw
inst/doc/gamma_imputation_Jackson_2014.pdf
inst/validation
inst/validation/score.R
inst/validation/jackson_simulation.Rmd
inst/validation/jackson_simulation.pdf
tests
tests/system_description.Rnw
tests/testthat.R
tests/testthat
tests/testthat/test-internalGamma.R
tests/testthat/test-gammaImputedata.R
tests/testthat/parallel.R
tests/testthat/test-validation.R
tests/testthat/gamma_test.rda
tests/testthat/test-scoreStatSet.R
tests/testthat/generate_test_data_gamma.R
tests/testthat/test-scoreExtract.R
tests/testthat/test-scoreStat.R
tests/testthat/test-options.R
tests/testthat/test-scoreSystem.R
tests/testthat/test-timedependent.R
tests/testthat/test-gammaStat.R
tests/testthat/test-validationGamma.R
tests/testthat/test-internalScore.R
NAMESPACE
data
data/ScoreTimeDep.rda
data/ScoreInd.rda
R
R/scoreImputedSet.R
R/parallel.R
R/gammaStat.R
R/timedependent.R
R/validationGamma.R
R/InformativeCensoring-package.R
R/validation.R
R/generics.R
R/scoreImputedData.R
R/dataDescription.R
R/scoreStat.R
R/internalGamma.R
R/internalScore.R
R/scoreStatSet.R
R/options.R
R/gammaImputeData.R
R/tests.R
vignettes
vignettes/risk_score_imputation_Hsu_2009.Rnw
vignettes/bibliography.bib
vignettes/gamma_imputation_Jackson_2014.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/InformativeCensoring-package.Rd
man/GammaStat.object.Rd
man/GammaImputedData.object.Rd
man/gammaImpute.Rd
man/summary.ScoreStatSet.Rd
man/ScoreImputedData.object.Rd
man/ScoreStatList.object.Rd
man/NN.options.Rd
man/ImputeStat.Rd
man/ScoreStatSet.object.Rd
man/MakeTimeDepScore.Rd
man/ScoreInd.Rd
man/ScoreTD.object.Rd
man/col.headings.Rd
man/ScoreStatSet.Rd
man/ScoreStat.object.Rd
man/ScoreImputedSet.object.Rd
man/ExtractSingle.Rd
man/cox.zph.Rd
man/ScoreTimeDep.Rd
man/GammaImputedSet.object.Rd
man/ScoreImpute.Rd
man/GammaStatList.object.Rd
LICENSE
InformativeCensoring documentation built on May 19, 2017, 5:31 p.m.

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