IntNMF: Integrative Clustering of Multiple Genomic Dataset

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Carries out integrative clustering analysis using multiple types of genomic dataset.

Author
Prabhakar Chalise, Rama Raghavan, Brooke Fridley
Date of publication
2016-07-29 23:59:59
Maintainer
Prabhakar Chalise <pchalise@kumc.edu>
License
GPL-2
Version
1.1

View on CRAN

Man pages

ClusterEntropy
A function to measure cluster entropy
ClusterPurity
A function to measure cluster purity
ConsensusMatPlot
A function to create image plot of the consensus matrix
nmf.mnnals
Nonnegative Matrix Factorization of Multiple data using...
nmf.opt.k
Selection of optimum number of clusters (k)
SilhouettePlot
A function to plot silhouette width

Files in this package

IntNMF
IntNMF/NAMESPACE
IntNMF/R
IntNMF/R/SilhouettePlot.R
IntNMF/R/adj.cssls.R
IntNMF/R/logit.R
IntNMF/R/W.fcnnls.R
IntNMF/R/ClusterEntropy.R
IntNMF/R/nmf.opt.k.R
IntNMF/R/ConsensusMatPlot.R
IntNMF/R/nmf.mnnals.R
IntNMF/R/H.fcnnls.R
IntNMF/R/ClusterPurity.R
IntNMF/R/IntNMF-internal.R
IntNMF/MD5
IntNMF/DESCRIPTION
IntNMF/man
IntNMF/man/ClusterPurity.Rd
IntNMF/man/nmf.mnnals.Rd
IntNMF/man/ConsensusMatPlot.Rd
IntNMF/man/nmf.opt.k.Rd
IntNMF/man/ClusterEntropy.Rd
IntNMF/man/SilhouettePlot.Rd