IntNMF: Integrative Clustering of Multiple Genomic Dataset
Version 1.1

Carries out integrative clustering analysis using multiple types of genomic dataset.

Browse man pages Browse package API and functions Browse package files

AuthorPrabhakar Chalise, Rama Raghavan, Brooke Fridley
Date of publication2016-07-29 23:59:59
MaintainerPrabhakar Chalise <pchalise@kumc.edu>
LicenseGPL-2
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("IntNMF")

Man pages

ClusterEntropy: A function to measure cluster entropy
ClusterPurity: A function to measure cluster purity
ConsensusMatPlot: A function to create image plot of the consensus matrix
nmf.mnnals: Nonnegative Matrix Factorization of Multiple data using...
nmf.opt.k: Selection of optimum number of clusters (k)
SilhouettePlot: A function to plot silhouette width

Functions

ClusterEntropy Man page Source code
ClusterPurity Man page Source code
ConsensusMatPlot Man page Source code
H.fcnnls Source code
SilhouettePlot Man page Source code
W.fcnnls Source code
adj.cssls Source code
logit Source code
neg Source code
nmf.mnnals Man page Source code
nmf.opt.k Man page Source code
nndsvd.internal Source code
norm Source code
pos Source code

Files

NAMESPACE
R
R/SilhouettePlot.R
R/adj.cssls.R
R/logit.R
R/W.fcnnls.R
R/ClusterEntropy.R
R/nmf.opt.k.R
R/ConsensusMatPlot.R
R/nmf.mnnals.R
R/H.fcnnls.R
R/ClusterPurity.R
R/IntNMF-internal.R
MD5
DESCRIPTION
man
man/ClusterPurity.Rd
man/nmf.mnnals.Rd
man/ConsensusMatPlot.Rd
man/nmf.opt.k.Rd
man/ClusterEntropy.Rd
man/SilhouettePlot.Rd
IntNMF documentation built on May 19, 2017, 9:08 a.m.