InterVA.plot: Plot a individual level distribution of va probabilities.

In InterVA4: Replicate and Analyse 'InterVA4'

Description

The function takes input of a single va object and produces a summary plot for it.

Usage

InterVA.plot(va, type = "bar", min.prob = 0.01, ...)

Arguments

va	A va object
type	An indicator of the type of chart to plot. "pie" for pie chart; "bar" for bar chart.
min.prob	The minimum probability that is to be plotted in bar chart, or to be labeled in pie chart.
...	Arguments to be passed to/from graphic function barplot, pie, and more graphical paramters (see par). They will affect the main title, size and font of labels, and the radius of the pie chart.

See Also

CSMF

Examples

data(SampleInput)
sample.output <- InterVA(SampleInput, HIV = "h", Malaria = "v", write=FALSE)

## Individual level summary using pie chart
InterVA.plot(sample.output$VA[[7]], type = "pie", min.prob = 0.01, 
    main = "1st sample VA analysis using pie chart", clockwise = FALSE, 
    radius = 0.6, cex = 0.6, cex.main = 0.8)


## Individual level summary using bar chart
InterVA.plot(sample.output$VA[[7]], type = "bar", min.prob = 0.01, 
    main = "2nd sample VA analysis using bar chart", cex.main = 0.8)

InterVA4 documentation built on Nov. 13, 2019, 9:06 a.m.