IsoplotR: Statistical Toolbox for Radiometric Geochronology
Version 0.12

An R implementation of Ken Ludwig's popular Isoplot add-in to Microsoft Excel. Currently plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using the 'York' approach. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith' plots). Constructs Re-Os, Sm-Nd and Rb-Sr isochrons. Future versions will include functionality for Lu-Hf, Pb-Pb and U-series dating methods.

AuthorPieter Vermeesch [aut, cre]
Date of publication2017-05-07 13:34:24 UTC
MaintainerPieter Vermeesch <p.vermeesch@ucl.ac.uk>
LicenseGPL-2
Version0.12
URL http://isoplotr.london-geochron.com
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("IsoplotR")

Popular man pages

age: Calculate isotopic ages
cad: Plot continuous data as cumulative age distributions
concordia: Concordia diagram
ellipse: Get coordinates of error ellipse for plotting
kde: Create (a) kernel density estimate(s)
set.zeta: Calculate the zeta calibration coefficient for fission track...
yorkfit: Linear regression of X,Y-variables with correlated errors
See all...

All man pages Function index File listing

Man pages

age: Calculate isotopic ages
agespectrum: Plot a (40Ar/39Ar) release spectrum
cad: Plot continuous data as cumulative age distributions
central: Calculate U-Th-He (and fission track) central ages and...
concordia: Concordia diagram
ellipse: Get coordinates of error ellipse for plotting
examples: Example datasets for testing 'IsoplotR'
helioplot: Visualise U-Th-He data on a logratio plot or ternary diagram
isochron: Calculate and plot isochrons
kde: Create (a) kernel density estimate(s)
mds: Multidimensional Scaling
peakfit: Finite mixture modelling of geochronological datasets
radialplot: Visualise heteroscedastic data on a radial plot
read.data: Read geochronology data
settings: Load settings to and from json
set.zeta: Calculate the zeta calibration coefficient for fission track...
weightedmean: Calculate the weighted mean age
yorkfit: Linear regression of X,Y-variables with correlated errors

Functions

Abramson Source code
ArAr.age Source code
ArAr.age.ratios Source code
ArAr.inverse.ratios Source code
ArAr.normal.ratios Source code
BIC.fit Source code
EDM.age Source code
ICP.age Source code
KS.diss Source code
LL.concordia.age Source code
LL.concordia.comp Source code
LL.concordia.comp.default Source code
LL.concordia.comp.terawasserburg Source code
LL.concordia.comp.wetherill Source code
LL.concordia.intersection Source code
LL.norm Source code
LL.weightedmean Source code
PD.age Source code
RbSr.age Source code
ReOs.age Source code
SS.UThHe.uv Source code
SS.UThHe.uvw Source code
SmNd.age Source code
UPb.age Source code
UThHe.age Source code
UThHe2uv Source code
UThHe2uv.covmat Source code
UThHe2uvw Source code
UThHe2uvw.covmat Source code
add.exterr Source code
age Man page Source code
age.ArAr Man page Source code
age.PD Source code
age.RbSr Man page Source code
age.ReOs Man page Source code
age.SmNd Man page Source code
age.UPb Man page Source code
age.UThHe Man page Source code
age.default Man page Source code
age.fissiontracks Man page Source code
age.to.Pb206U238.ratio Source code
age.to.Pb207Pb206.ratio Source code
age.to.Pb207U235.ratio Source code
age.to.U238Pb206.ratio Source code
age.to.concordia.ratios Source code
age.to.terawasserburg.ratios Source code
age.to.titterington.ratios Source code
age.to.wetherill.ratios Source code
age2radial Source code
ages2peaks Source code
agespectrum Man page Source code
agespectrum.ArAr Man page Source code
agespectrum.default Man page Source code
as.ArAr Source code
as.LuHf Source code
as.PD Source code
as.RbSr Source code
as.ReOs Source code
as.SmNd Source code
as.UPb Source code
as.UThHe Source code
as.detritals Source code
as.fissiontracks Source code
as.other Source code
att Source code
binomial.mixtures Source code
botev Source code
cad Man page Source code
cad.ArAr Man page Source code
cad.RbSr Man page Source code
cad.ReOs Man page Source code
cad.SmNd Man page Source code
cad.UPb Man page Source code
cad.UThHe Man page Source code
cad.default Man page Source code
cad.detritals Man page Source code
cad.fissiontracks Man page Source code
central Man page Source code
central.UThHe Man page Source code
central.default Man page Source code
central.fissiontracks Man page Source code
commonbandwidth Source code
concordia Man page Source code
concordia.age Source code
concordia.age.UPb Source code
concordia.age.default Source code
concordia.comp Source code
concordia.intersection Source code
concordia.line Source code
concordia.title Source code
cor2cov Source code
dD76dR Source code
dD76dl5 Source code
dD76dl8 Source code
dD76dt Source code
data2rxry Source code
data2york Source code
data2york.ArAr Source code
data2york.PD Source code
data2york.UPb Source code
data2york.default Source code
dct1d Source code
discordant.composition Source code
discordia.age Source code
discordia.plot Source code
discordia.title Source code
diss Source code
doSm Source code
ellipse Man page Source code
emptyplot Source code
eq.6.9 Source code
errorprop Source code
etchfact Source code
examples Man page
f147Sm Source code
filter.UPb.ages Source code
fissiontrack.age Source code
fixedpoint Source code
fromJSON Source code
fromJSON_R Source code
geomean.Sm Source code
get.ArAr.age Source code
get.ArAr.ratio Source code
get.EDM.age Source code
get.He Source code
get.ICP.age Source code
get.PD.age Source code
get.PD.ratio Source code
get.Pb206U238.age Source code
get.Pb206U238.age.UPb Source code
get.Pb206U238.age.default Source code
get.Pb206U238.age.terawasserburg Source code
get.Pb206U238.age.wetherill Source code
get.Pb206U238.ratios Source code
get.Pb207Pb206.age Source code
get.Pb207Pb206.age.UPb Source code
get.Pb207Pb206.age.default Source code
get.Pb207Pb206.age.terawasserburg Source code
get.Pb207Pb206.age.wetherill Source code
get.Pb207Pb206.ratios Source code
get.Pb207U235.age Source code
get.Pb207U235.age.UPb Source code
get.Pb207U235.age.default Source code
get.Pb207U235.age.wetherill Source code
get.Pb207U235.ratios Source code
get.RbSr.age Source code
get.RbSr.ratio Source code
get.ReOs.age Source code
get.ReOs.ratio Source code
get.SmNd.age Source code
get.SmNd.ratio Source code
get.U238Pb206.ratios Source code
get.UThHe.age Source code
get.UsU Source code
get.absolute.zeta Source code
get.concordia.SS Source code
get.concordia.limits Source code
get.cor.68.76 Source code
get.cor.75.68 Source code
get.cor.xzyz Source code
get.cor.xzzy Source code
get.cor.zxzy Source code
get.cov.xzyz Source code
get.cov.xzzy Source code
get.cov.zxzy Source code
get.covmat Source code
get.covmat.default Source code
get.helioplot.contours Source code
get.helioplot.tticks Source code
get.limits Source code
get.logratio.contours Source code
get.logratio.tticks Source code
get.logratioplot.limits Source code
get.max.z Source code
get.min.age.L Source code
get.min.z Source code
get.offset Source code
get.peakfit.covmat Source code
get.props.err Source code
get.radial.tticks Source code
get.selection Source code
get.selection.ArAr Source code
get.selection.default Source code
get.tticks Source code
get.weightedmean Source code
get.york.mswd Source code
get.york.xy Source code
get.z0 Source code
getG Source code
getfact Source code
getkde Source code
getkde.default Source code
getkde.detritals Source code
getmM Source code
hasClass Source code
helioplot Man page Source code
helioplot.title Source code
iatt Source code
imass Source code
initial.concordia.age Source code
initial.concordia.age.default Source code
initial.concordia.age.terawasserburg Source code
initial.concordia.age.wetherill Source code
intersection.misfit Source code
iratio Source code
isochron Man page Source code
isochron.ArAr Man page Source code
isochron.PD Source code
isochron.RbSr Man page Source code
isochron.ReOs Man page Source code
isochron.SmNd Man page Source code
isochron.default Man page Source code
isochron.title Source code
kde Man page Source code
kde.ArAr Man page Source code
kde.RbSr Man page Source code
kde.ReOs Man page Source code
kde.SmNd Man page Source code
kde.UPb Man page Source code
kde.UThHe Man page Source code
kde.default Man page Source code
kde.detritals Man page Source code
kde.fissiontracks Man page Source code
lambda Source code
length.ArAr Source code
length.PD Source code
length.UPb Source code
mds Man page Source code
mds.default Man page Source code
mds.detritals Man page Source code
min.age.model Source code
minage2legend Source code
mindens Source code
mswd.concordia Source code
newJSONParser Source code
normal.mixtures Source code
numgrains Source code
numgrains.ArAr Source code
numgrains.RbSr Source code
numgrains.ReOs Source code
numgrains.SmNd Source code
numgrains.UPb Source code
numgrains.default Source code
numgrains.fissiontracks Source code
onLoad Source code
parseArray Source code
parseFalse Source code
parseNull Source code
parseNumber Source code
parseObj Source code
parseString Source code
parseTrue Source code
parseValue Source code
peakfit Man page Source code
peakfit.ArAr Man page Source code
peakfit.RbSr Man page Source code
peakfit.ReOs Man page Source code
peakfit.SmNd Man page Source code
peakfit.UPb Man page Source code
peakfit.UThHe Man page Source code
peakfit.default Man page Source code
peakfit.fissiontracks Man page Source code
peakfit.helper Source code
peaks2legend Source code
pilotdensity Source code
plateau Source code
plateau.title Source code
plot.KDE Source code
plot.KDEs Source code
plot.MDS Source code
plot.central.ellipse Source code
plot.helioplot.contours Source code
plot.helioplot.ellipses Source code
plot.helioplot.frame Source code
plot.logratio.contours Source code
plot.logratio.ellipses Source code
plot.logratio.frame Source code
plot.points Source code
plot.radial.axes Source code
plot.radial.lines Source code
plot.weightedmean Source code
plotlines Source code
ppm2ratios Source code
ppm2ratios.RbSr Source code
ppm2ratios.ReOs Source code
ppm2ratios.SmNd Source code
ppm2ratios.default Source code
radial.plot Source code
radial.scale Source code
radial.title Source code
radialplot Man page Source code
radialplot.ArAr Man page Source code
radialplot.RbSr Man page Source code
radialplot.ReOs Man page Source code
radialplot.SmNd Man page Source code
radialplot.UPb Man page Source code
radialplot.UThHe Man page Source code
radialplot.default Man page Source code
radialplot.fissiontracks Man page Source code
radialplot.helper Source code
read.data Man page Source code
read.data.default Man page Source code
read.data.matrix Man page Source code
regression.title Source code
renormalise Source code
roundit Source code
scatterplot Source code
select Source code
set.zeta Man page Source code
settings Man page Source code
shiny2matrix Source code
t2z Source code
tera.wasserburg Source code
theta2age Source code
titterington Source code
toJSON Source code
tracklength Source code
unzip.vector Source code
uv2HeUTh Source code
uv2UThHe Source code
uvw2UThHe Source code
weightedmean Man page Source code
weightedmean.ArAr Man page Source code
weightedmean.RbSr Man page Source code
weightedmean.ReOs Man page Source code
weightedmean.SmNd Man page Source code
weightedmean.UPb Man page Source code
weightedmean.UThHe Man page Source code
weightedmean.default Man page Source code
weightedmean.fissiontracks Man page Source code
weightedmean.helper Source code
wetherill Source code
wtdmean.title Source code
x2zs Source code
x2zs.default Source code
x2zs.fissiontracks Source code
xyz2xy Source code
yorkfit Man page Source code
z2rxy Source code
zip.matrix Source code

Files

inst
inst/ArAr2.csv
inst/ReOs2.csv
inst/DZ.csv
inst/MountTom.csv
inst/Namib.csv
inst/UThSmHe.csv
inst/SmNd1.csv
inst/UPb2.csv
inst/ArAr3.csv
inst/constants.json
inst/ReOs1.csv
inst/spectrum.csv
inst/KDE.csv
inst/RbSr1.csv
inst/FT1.csv
inst/FT2.csv
inst/average.csv
inst/RbSr2.csv
inst/ArAr1.csv
inst/UThHe.csv
inst/SmNd2.csv
inst/LuHf2.csv
inst/UPb3.csv
inst/UPb1.csv
inst/FT3.csv
NAMESPACE
data
data/examples.rda
R
R/PD.R
R/SmNd.R
R/botev.R
R/regression.R
R/age.R
R/UPb.R
R/agespectrum.R
R/radialplot.R
R/weightedmean.R
R/mds.R
R/io.R
R/documentation.R
R/concordia.R
R/kde.R
R/peakfit.R
R/fissiontracks.R
R/toolbox.R
R/ReOs.R
R/ArAr.R
R/discordia.R
R/UThHe.R
R/errorellipse.R
R/cad.R
R/constants.R
R/json.R
R/RbSr.R
R/helioplot.R
R/zzz.R
R/isochron.R
R/central.R
MD5
DESCRIPTION
man
man/central.Rd
man/agespectrum.Rd
man/ellipse.Rd
man/yorkfit.Rd
man/peakfit.Rd
man/read.data.Rd
man/set.zeta.Rd
man/radialplot.Rd
man/mds.Rd
man/concordia.Rd
man/age.Rd
man/kde.Rd
man/settings.Rd
man/examples.Rd
man/cad.Rd
man/helioplot.Rd
man/weightedmean.Rd
man/isochron.Rd
IsoplotR documentation built on May 19, 2017, 10:24 p.m.

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