Nothing
tests/testthat/test_fsteachsnphudson.R
In KRIS: Keen and Reliable Interface Subroutines for Bioinformatic Analysis
context("Fst Hudson all SNPs")
test_that("calculate Fst Hudson for all SNPs",{
data(example_SNP)
idx1 <- which(sample_labels == 'pop1')
idx2 <- which(sample_labels == 'pop2')
fst.pairwise <- fst.each.snp.hudson(simsnp$snp, idx1, idx2)
expect_equal(fst.pairwise[1], 0.007396462)
expect_equal(fst.pairwise[2], 0.09957484)
expect_length(fst.pairwise, 2000)
})
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KRIS documentation built on Jan. 21, 2021, 5:08 p.m.
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context("Fst Hudson all SNPs")
test_that("calculate Fst Hudson for all SNPs",{
data(example_SNP)
idx1 <- which(sample_labels == 'pop1')
idx2 <- which(sample_labels == 'pop2')
fst.pairwise <- fst.each.snp.hudson(simsnp$snp, idx1, idx2)
expect_equal(fst.pairwise[1], 0.007396462)
expect_equal(fst.pairwise[2], 0.09957484)
expect_length(fst.pairwise, 2000)
})
Try the KRIS package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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