Man pages for KinformR
Relationship-Informed Pedigree and Variant Scoring
| add.fam.scores | Sum all the given scores and return a single vector with... |
| assign.a | For affecteds: Take genetic variant and determine the... |
| assign.status | Take a disease status and a genetic variant and determine... |
| assign.u | For unaffecteds: Take a genetic variant and determine the... |
| build.relation.dict | Build dictionary with the relationships falling in the... |
| calc.rv.score | Calculate a relatedness-weighted score for a given rare... |
| encode.rows | Take the relationship matrix and the encoded statuses of... |
| ibd | Calculation of Identity by descent (IBD). |
| penetrance | Likelihood function for calculation of Pedigree-based... |
| read.indiv | Read in variant and status info for individuals. |
| read.pedigree | Read in the encoded pedigree data file. |
| read.relation.mat | Read in relationship matrix Apply the individual names to the... |
| read.var.table | Read in a vcf-like subset of information obtained from use of... |
| score | Score the pedigrees using the pihat values. |
| score.fam | Given a relationship matrix and status dataframe, score a... |
| score.pedigree | Take the encoded information about the pedigrees and... |
| score.variant.status | Take the dataframe with variants and status and determine... |
| subset.mat | Take the matrix and subset out only the encoded individuals... |
