read.var.table: Read in a vcf-like subset of information obtained from use of...
In KinformR: Relationship-Informed Pedigree and Variant Scoring
read.var.table R Documentation
Read in a vcf-like subset of information obtained from
use of seqbiopy's vcf_extract function on a vcf with the
status encoded in the indivudal's names
Description
Note - ensure the status in the names match your desired encoding!
There are individuals with ambiguous statues, that you may require to
be encoded in a specific fashion for you current purposes.
Usage
read.var.table(fname)
Arguments
fname
A file name, expected format of contents is:
#CHROM POS REF ALT MS-5678-1001_A MS-5678-1002_U ...
chr3 46203838 G A 0/1 0/0 ...
Value
A dataframe.
Data will be worked into a data frame with format.
name status variant
MS-5678-1001 A 0/1
Examples
ex.infile <-system.file('extdata/example_vcf_extract_5678.tsv',
package = 'KinformR')
read.var.table(ex.infile)
KinformR documentation built on Feb. 17, 2026, 5:07 p.m.
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| read.var.table | R Documentation |
Read in a vcf-like subset of information obtained from use of seqbiopy's vcf_extract function on a vcf with the status encoded in the indivudal's names
Description
Note - ensure the status in the names match your desired encoding! There are individuals with ambiguous statues, that you may require to be encoded in a specific fashion for you current purposes.
Usage
read.var.table(fname)
Arguments
fname |
A file name, expected format of contents is: #CHROM POS REF ALT MS-5678-1001_A MS-5678-1002_U ... chr3 46203838 G A 0/1 0/0 ... |
Value
A dataframe. Data will be worked into a data frame with format. name status variant MS-5678-1001 A 0/1
Examples
ex.infile <-system.file('extdata/example_vcf_extract_5678.tsv',
package = 'KinformR')
read.var.table(ex.infile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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