KnockoffTrio.example: Example data for KnockoffTrio

In KnockoffTrio: GWAS with Trio and Duo Data using Knockoff Statistics for FDR Control

Example data for KnockoffTrio

Description

A toy example of haplotype and genotype data for trios and duos.

Usage

KnockoffTrio.example

Format

KnockoffTrio.example contains the following items:

trio

A 9*5 numeric genotype matrix of 3 trios and 5 variants. Each trio contains 3 rows in the order of father, mother and offspring. Each column represents a variant.

trio.hap

A 18*5 numeric haplotype matrix of 3 trios and 5 variants. Each trio contains 6 rows in the order of father, mother and offspring. Each column represents a variant.

duo.hap

A 12*5 numeric haplotype matrix of 3 duos and 5 variants. Each duo contains 4 rows in the order of a single parent and offspring. Each column represents a variant.

pos

A numeric vector of length 5 for the position of 5 variants.

KnockoffTrio documentation built on April 4, 2025, 2:14 a.m.