plot_network: Create network visualization from results

In LBDiscover: Literature-Based Discovery Tools for Biomedical Research

Create network visualization from results

Description

This function creates a network visualization from ABC results.

Usage

plot_network(
  results,
  output_file = "network.png",
  width = 1200,
  height = 900,
  resolution = 120,
  top_n = 15,
  min_score = 1e-04,
  node_size_factor = 5,
  color_by = "type",
  title = "Network Visualization",
  show_entity_types = TRUE,
  label_size = 1,
  verbose = TRUE
)

Arguments

results	The results to visualize
output_file	Filename for the output PNG (default: "network.png")
width	Width of the output image (default: 1200)
height	Height of the output image (default: 900)
resolution	Resolution of the output image (default: 120)
top_n	Maximum number of results to include (default: 15)
min_score	Minimum score threshold (default: 0.0001)
node_size_factor	Factor for scaling node sizes (default: 5)
color_by	Column to use for node colors (default: "type")
title	Plot title (default: "Network Visualization")
show_entity_types	Logical; if TRUE, show entity types (default: TRUE)
label_size	Relative size for labels (default: 1.0)
verbose	Logical; if TRUE, print status messages (default: TRUE)

Value

Invisible NULL (creates a file as a side effect)

LBDiscover documentation built on June 16, 2025, 5:09 p.m.