vis_network: Create an enhanced network visualization of ABC connections

In LBDiscover: Literature-Based Discovery Tools for Biomedical Research

Create an enhanced network visualization of ABC connections

Description

This function creates an improved network visualization of ABC connections that displays entity types when available, without enforcing type constraints.

Usage

vis_network(
  abc_results,
  top_n = 25,
  min_score = 0.1,
  show_significance = TRUE,
  node_size_factor = 5,
  color_by = "type",
  title = "ABC Model Network",
  show_entity_types = TRUE,
  label_size = 1,
  layout_seed = NULL
)

Arguments

abc_results	A data frame containing ABC results.
top_n	Number of top results to visualize.
min_score	Minimum score threshold for including connections.
show_significance	Logical. If TRUE, highlights significant connections.
node_size_factor	Factor for scaling node sizes.
color_by	Column to use for node colors. Default is 'type'.
title	Plot title.
show_entity_types	Logical. If TRUE, includes entity types in node labels.
label_size	Relative size for labels. Default is 1.
layout_seed	Optional seed for layout reproducibility. If NULL, no seed is set.

Value

NULL invisibly. The function creates a plot as a side effect.

LBDiscover documentation built on June 16, 2025, 5:09 p.m.