LDcorSV: Linkage disequilibrium corrected by the structure and the relatedness

The package provides a set of functions which aim is to propose four measures of linkage disequilibrium: the usual r^2 measure, the r^2_S measure (r^2 corrected by the structure sample), the r^2_V (r^2 corrected by the relatedness of genotyped individuals), the r^2_VS measure (r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample).

Author
David Desrousseaux, Florian Sandron, Aurelie Siberchicot, Christine Cierco-Ayrolles and Brigitte Mangin
Date of publication
2013-07-04 16:55:36
Maintainer
Brigitte Mangin <Brigitte.Mangin@toulouse.inra.fr>
License
GPL (>= 2)
Version
1.3.1

View on CRAN

Man pages

data.test
data.test
Info.Locus
Information on loci
Inv.proj.matrix.sdp
Inv.proj.matrix.sdp
LDcorSV-package
LDcorSV
LD.Measures
LD Measures
Measure.R2
r^2 measure
Measure.R2S
r^2_S measure
Measure.R2V
r^2_V measure
Measure.R2VS
r^2_VS measure

Files in this package

LDcorSV
LDcorSV/MD5
LDcorSV/man
LDcorSV/man/data.test.Rd
LDcorSV/man/Measure.R2VS.Rd
LDcorSV/man/Measure.R2V.Rd
LDcorSV/man/Measure.R2S.Rd
LDcorSV/man/Measure.R2.Rd
LDcorSV/man/LDcorSV-package.Rd
LDcorSV/man/LD.Measures.Rd
LDcorSV/man/Inv.proj.matrix.sdp.Rd
LDcorSV/man/Info.Locus.Rd
LDcorSV/data
LDcorSV/data/data.test.rda
LDcorSV/R
LDcorSV/R/Measure.R2VS.R
LDcorSV/R/Measure.R2V.R
LDcorSV/R/Measure.R2S.R
LDcorSV/R/Measure.R2.R
LDcorSV/R/LD.Measures.R
LDcorSV/R/Inv.proj.matrix.sdp.R
LDcorSV/R/Info.Locus.R
LDcorSV/NAMESPACE
LDcorSV/DESCRIPTION