LDcorSV-package: LDcorSV
In LDcorSV: Linkage Disequilibrium Corrected by the Structure and the Relatedness
Description
Author(s)
References
Description
The package provides a set of functions which aim is to propose four measures of linkage disequilibrium:
- Measure.R2: the usual r^2 measure.
- Measure.R2S: r^2 corrected by the structure of the sample (r^2_S).
- Measure.R2V: r^2 corrected by the relatedness of genotyped individuals (r^2_V).
- Measure.R2VS: r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample (r^2_VS).
- LD.Measures: this function computes the four measures of linkage disequilibrium (r^2, r^2_V,
r^2_S and r^2_{VS}) for a set of loci and gives extra information about them.
Author(s)
David Desrousseaux, Florian Sandron, Aurélie Siberchicot, Christine Cierco-Ayrolles and Brigitte Mangin
Maintainer: aurelie.siberchicot@univ-lyon1.fr
References
Mangin, B., Siberchicot, A., Nicolas, S., Doligez, A., This, P., Cierco-Ayrolles, C. (2012). Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness. Heredity, 108 (3), 285-291. DOI: 10.1038/hdy.2011.73
LDcorSV documentation built on Aug. 26, 2020, 9:06 a.m.
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Description Author(s) References
Description
The package provides a set of functions which aim is to propose four measures of linkage disequilibrium:
- Measure.R2: the usual r^2 measure.
- Measure.R2S: r^2 corrected by the structure of the sample (r^2_S).
- Measure.R2V: r^2 corrected by the relatedness of genotyped individuals (r^2_V).
- Measure.R2VS: r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample (r^2_VS).
- LD.Measures: this function computes the four measures of linkage disequilibrium (r^2, r^2_V,
r^2_S and r^2_{VS}) for a set of loci and gives extra information about them.
Author(s)
David Desrousseaux, Florian Sandron, Aurélie Siberchicot, Christine Cierco-Ayrolles and Brigitte Mangin
Maintainer: aurelie.siberchicot@univ-lyon1.fr
References
Mangin, B., Siberchicot, A., Nicolas, S., Doligez, A., This, P., Cierco-Ayrolles, C. (2012). Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness. Heredity, 108 (3), 285-291. DOI: 10.1038/hdy.2011.73
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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