LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.

Package details

AuthorJi-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Youwei Yan [ctb], Jinko Graham [aut]
MaintainerBrad McNeney <mcneney@sfu.ca>
LicenseGPL-3
Version0.99-7
URL https://sfustatgen.github.io/LDheatmap/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("LDheatmap")

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LDheatmap documentation built on July 15, 2019, 1:02 a.m.