LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

Install the latest version of this package by entering the following in R:
install.packages("LDheatmap")
AuthorJi-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>
Date of publication2016-08-24 18:02:24
MaintainerBrad McNeney <mcneney@sfu.ca>
LicenseGPL-3
Version0.99-2
http://stat.sfu.ca/statgen/research/ldheatmap.html

View on CRAN

Files

inst
inst/CITATION
inst/ChangeLog
inst/extdata
inst/extdata/addTracks.RData
inst/doc
inst/doc/LDheatmap.pdf
inst/doc/LDheatmap.R
inst/doc/addTracks.Rnw
inst/doc/addTracks.R
inst/doc/addTracks.pdf
inst/doc/LDheatmap.Rnw
NAMESPACE
demo
demo/LDheatmap.R
demo/00Index
data
data/CHBJPTData.rda
data/GIMAP5.RData
data/hapmapCHB.txt.gz
data/hapmapCEU.txt.gz
data/hapmapJPT.txt.gz
data/datalist
data/CEUData.rda
data/GIMAP5.CEU.RData
R
R/utils.R R/LDheatmap.marks.R R/LDheatmap.highlight.R R/LDheatmap.R R/LDheatmap.addGenes.R R/plotGenes.R R/LDheatmap.addRecombRate.R R/LDheatmap.addScatterplot.R R/LDheatmap.addGrob.R R/recombRate.R
vignettes
vignettes/LDheatmap.bib
vignettes/addTracks.Rnw
vignettes/gTree.pdf
vignettes/LDheatmap.Rnw
vignettes/jsslogo.jpg
MD5
build
build/vignette.rds
DESCRIPTION
man
man/GIMAP5.Rd man/CHBJPTData.Rd man/LDheatmap.highlight.Rd man/recombRate.Rd man/LDheatmap-internal.Rd man/GIMAP5CEU.Rd man/CEUData.Rd man/LDheatmap.marks.Rd man/LDheatmap.Rd man/LDheatmap.addGenes.Rd man/LDheatmap.addGrob.Rd man/LDheatmap.addScatterplot.Rd man/LDheatmap.addRecombRate.Rd man/plotGenes.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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