LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

AuthorJi-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>
Date of publication2016-08-24 18:02:24
MaintainerBrad McNeney <mcneney@sfu.ca>
LicenseGPL-3
Version0.99-2
http://stat.sfu.ca/statgen/research/ldheatmap.html

View on CRAN

Files in this package

LDheatmap
LDheatmap/inst
LDheatmap/inst/CITATION
LDheatmap/inst/ChangeLog
LDheatmap/inst/extdata
LDheatmap/inst/extdata/addTracks.RData
LDheatmap/inst/doc
LDheatmap/inst/doc/LDheatmap.pdf
LDheatmap/inst/doc/LDheatmap.R
LDheatmap/inst/doc/addTracks.Rnw
LDheatmap/inst/doc/addTracks.R
LDheatmap/inst/doc/addTracks.pdf
LDheatmap/inst/doc/LDheatmap.Rnw
LDheatmap/NAMESPACE
LDheatmap/demo
LDheatmap/demo/LDheatmap.R
LDheatmap/demo/00Index
LDheatmap/data
LDheatmap/data/CHBJPTData.rda
LDheatmap/data/GIMAP5.RData
LDheatmap/data/hapmapCHB.txt.gz
LDheatmap/data/hapmapCEU.txt.gz
LDheatmap/data/hapmapJPT.txt.gz
LDheatmap/data/datalist
LDheatmap/data/CEUData.rda
LDheatmap/data/GIMAP5.CEU.RData
LDheatmap/R
LDheatmap/R/utils.R LDheatmap/R/LDheatmap.marks.R LDheatmap/R/LDheatmap.highlight.R LDheatmap/R/LDheatmap.R LDheatmap/R/LDheatmap.addGenes.R LDheatmap/R/plotGenes.R LDheatmap/R/LDheatmap.addRecombRate.R LDheatmap/R/LDheatmap.addScatterplot.R LDheatmap/R/LDheatmap.addGrob.R LDheatmap/R/recombRate.R
LDheatmap/vignettes
LDheatmap/vignettes/LDheatmap.bib
LDheatmap/vignettes/addTracks.Rnw
LDheatmap/vignettes/gTree.pdf
LDheatmap/vignettes/LDheatmap.Rnw
LDheatmap/vignettes/jsslogo.jpg
LDheatmap/MD5
LDheatmap/build
LDheatmap/build/vignette.rds
LDheatmap/DESCRIPTION
LDheatmap/man
LDheatmap/man/GIMAP5.Rd LDheatmap/man/CHBJPTData.Rd LDheatmap/man/LDheatmap.highlight.Rd LDheatmap/man/recombRate.Rd LDheatmap/man/LDheatmap-internal.Rd LDheatmap/man/GIMAP5CEU.Rd LDheatmap/man/CEUData.Rd LDheatmap/man/LDheatmap.marks.Rd LDheatmap/man/LDheatmap.Rd LDheatmap/man/LDheatmap.addGenes.Rd LDheatmap/man/LDheatmap.addGrob.Rd LDheatmap/man/LDheatmap.addScatterplot.Rd LDheatmap/man/LDheatmap.addRecombRate.Rd LDheatmap/man/plotGenes.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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