LGEWIS: Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies
Version 0.2

Functions for testing the genetic association/gene-environment interaction in longitudinal gene-environment-wide interaction studies. Generalized score type tests are used for set based analyses. Then GEE based score tests are applied to all single variants within the defined set.

Browse man pages Browse package API and functions Browse package files

AuthorZihuai He, Seunggeun Lee, Bhramar Mukherjee, Min Zhang
Date of publication2015-10-14 09:48:39
MaintainerZihuai He <zihuai@umich.edu>
LicenseGPL-3
Version0.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("LGEWIS")

Man pages

GA.prelim: The preliminary data management for GA (tests for genetic...
GA.SSD.All: Genetic association tests for multiple regions/genes using...
GA.SSD.OneSet_SetIndex: Genetic association tests for a single region/gene using SSD...
GA.test: Test the association between an quantitative outcome variable...
GEI.prelim: The preliminary data management for GEI (tests for...
GEI.SSD.All: Gene-environment interaction tests for multiple regions/genes...
GEI.SSD.OneSet_SetIndex: Gene-environment interaction tests for a single region/gene...
GEI.test: Test the interaction between an environemental exposure and a...
LGEWIS_example: Data example for LGEWIS (tests for genetic association or...

Functions

Center Source code Source code
Check.near Source code Source code
Check.same Source code Source code
Common Source code Source code
D.matrix Source code Source code
GA.SSD.All Man page Source code
GA.SSD.OneSet_SetIndex Man page Source code
GA.Score Source code
GA.bootstrap Source code
GA.prelim Man page Source code
GA.test Man page Source code
GEI.PCA Source code
GEI.PLS Source code
GEI.R2 Source code
GEI.SSD.All Man page Source code
GEI.SSD.OneSet_SetIndex Man page Source code
GEI.Score Source code
GEI.bootstrap Source code
GEI.prelim Man page Source code
GEI.test Man page Source code
GEI.wPCA Source code
Get.inv.sqrt Source code Source code
Get.inverse Source code Source code
Get.sqrt Source code Source code
Impute Source code Source code
LGEWIS.example Man page
Minor.allele Source code Source code
Standardize Source code Source code
Variation Source code Source code
effect.n Source code Source code
ps Source code

Files

NAMESPACE
data
data/LGEWIS.example.rda
R
R/GA.R
R/GEI.R
R/Main_SSD.R
MD5
DESCRIPTION
man
man/LGEWIS_example.Rd
man/GEI.prelim.Rd
man/GEI.SSD.OneSet_SetIndex.Rd
man/GEI.SSD.All.Rd
man/GA.SSD.OneSet_SetIndex.Rd
man/GEI.test.Rd
man/GA.prelim.Rd
man/GA.test.Rd
man/GA.SSD.All.Rd
LGEWIS documentation built on May 20, 2017, 12:47 a.m.