LGEWIS: Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies

Functions for testing the genetic association/gene-environment interaction in longitudinal gene-environment-wide interaction studies. Generalized score type tests are used for set based analyses. Then GEE based score tests are applied to all single variants within the defined set.

Author
Zihuai He, Seunggeun Lee, Bhramar Mukherjee, Min Zhang
Date of publication
2015-10-14 09:48:39
Maintainer
Zihuai He <zihuai@umich.edu>
License
GPL-3
Version
0.2

View on CRAN

Man pages

GA.prelim
The preliminary data management for GA (tests for genetic...
GA.SSD.All
Genetic association tests for multiple regions/genes using...
GA.SSD.OneSet_SetIndex
Genetic association tests for a single region/gene using SSD...
GA.test
Test the association between an quantitative outcome variable...
GEI.prelim
The preliminary data management for GEI (tests for...
GEI.SSD.All
Gene-environment interaction tests for multiple regions/genes...
GEI.SSD.OneSet_SetIndex
Gene-environment interaction tests for a single region/gene...
GEI.test
Test the interaction between an environemental exposure and a...
LGEWIS_example
Data example for LGEWIS (tests for genetic association or...

Files in this package

LGEWIS
LGEWIS/NAMESPACE
LGEWIS/data
LGEWIS/data/LGEWIS.example.rda
LGEWIS/R
LGEWIS/R/GA.R
LGEWIS/R/GEI.R
LGEWIS/R/Main_SSD.R
LGEWIS/MD5
LGEWIS/DESCRIPTION
LGEWIS/man
LGEWIS/man/LGEWIS_example.Rd
LGEWIS/man/GEI.prelim.Rd
LGEWIS/man/GEI.SSD.OneSet_SetIndex.Rd
LGEWIS/man/GEI.SSD.All.Rd
LGEWIS/man/GA.SSD.OneSet_SetIndex.Rd
LGEWIS/man/GEI.test.Rd
LGEWIS/man/GA.prelim.Rd
LGEWIS/man/GA.test.Rd
LGEWIS/man/GA.SSD.All.Rd