Man pages for LISTO
Performing Comprehensive Overlap Assessments
| bfCorrectV | Perform Bonferroni correction on a vector of p-values |
| buildSeuratMarkerList | Build a Seurat marker list ready to be used by LISTO |
| factorialPrimePowers | Generate the prime factor decomposition of n factorial. |
| filterItems | Filter items based on a provided cutoff |
| generateCutoffs | Generate cutoffs for filtering overlaps |
| getObjectValues | Extract numeric values from an input object |
| mtCorrectDF | Perform multiple testing correction on a data frame column |
| mtCorrectHelper | Helper function for multiple comparison testing |
| mtCorrectV | Perform multiple testing correction on a vector of p-values |
| probCounts2MN | Compute the probability that two subsets of sets M and N... |
| probCounts3N | Compute the probability that three subsets of given sizes... |
| pvalCounts2MN | Compute the probability that two subsets of sets M and N... |
| pvalCounts3N | Compute the probability that three subsets of a set intersect... |
| pvalObjects | Assess the overlap of two or three objects |
| pvalObjectsCore | Compute the p-value of overlap for two or three objects |
| pvalSets2MN | Compute the p-value of intersection of two subsets of sets M... |
| pvalSets2N | Calculate the p-value of intersection for two sets |
| pvalSets3N | Compute the p-value of intersection of three subsets |
| runLISTO | Assess the overlap of two or three lists of objects. |
| vChoose | Compute the prime factor decomposition of the binomial... |
| vNumeratorMN | Compute the prime representation of the numerator of the... |
| vSum | Add numeric vectors of different lenghts |
