LSPFP: Lysate and Secretome Peptide Feature Plotter

Creates plots of peptides from shotgun proteomics analysis of secretome and lysate samples. These plots contain associated protein features and scores for potential secretion and truncation.

Install the latest version of this package by entering the following in R:
install.packages("LSPFP")
AuthorRafael Dellen, with contributions of Fabian Kruse
Date of publication2016-05-19 16:35:29
MaintainerRafael Dellen <Rafael.Dellen@uni-duesseldorf.de>
LicenseGPL-3
Version1.0.0

View on CRAN

Functions

bdown Man page
create_countintensematrix Man page
createFeatureTable Man page
createNewExp Man page
detectTerminal Man page
fasta2rds Man page
getAttributeField Man page
getExperimentSourceFiles Man page
getPositions Man page
getTopofeatures Man page
gff2rds Man page
gffRead Man page
loadData Man page
LoadExp Man page
localfasta2rds Man page
localgff2rds Man page
LSPFP Man page
lspfp_getFastaInformation Man page
LSPFP-package Man page
mylogisfunc Man page
openCSV Man page
openProgress Man page
openTXT Man page
peptide_filter Man page
print_peptides Man page
printSelectedPeptides Man page
print_topoareas Man page
secscoring Man page
setDirStruc Man page
ss_openCSV Man page
ss_openTXT Man page
truncscoring Man page
wrapperLSPFP Man page
wrapperPLM Man page
wrapperSecScore Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.