printSelectedPeptides: Only print peptides

In LSPFP: Lysate and Secretome Peptide Feature Plotter

Description

This function allows printing of different peptide plots after running wrapperLSPFP once.

Usage

printSelectedPeptides(path, fname, mysorteddf = NULL)

Arguments

path	Character vector giving the path to a data folder in the analysis directory.
fname	Character vector containing the name of the new file.
mysorteddf	A data.frame that can be a sorted and/or shortened data.frame of the feature_table from path.

Details

This function offers the possibility to print more selectively peptide plots after wrapperLSPFP was applied. To get a smaller plot, it is necessary to commit an existing anlaysis directory from the AnalysisData directory. The new file is named like fname and stored in the specified directory path. If a smaller dataset should be printed, a row wise sorted or shortened feature_table is to be used as basis for printing but no columns should be removed. This new data.frame (mysorteddf) will be processed for printing.

Value

A PDF file named like fname in the analysis directory path. Returns TRUE if the printing was successful and FALSE if not.

Note

A detailed vignette will follow soon.

Author(s)

Rafael Dellen
[e-mail]

Examples

## Not run: 
#To run this example you need to run the example from wrapperLSPFP

path <- paste0(getwd(),"/AnalysisData/Test_Mouse")
test <- read.csv(paste0(path, "/feature_table.csv"))


#Rows can be deleted or sorted but columns should not be removed
#Print the first 25 rows
myprint <- test[1:25,]
#Sort by accession
myprint2 <- test[sort(test$Accession), ]

printSelectedPeptides(path, "newfeaturetable", mysorteddf = myprint)


## End(Not run)

LSPFP documentation built on July 1, 2020, 6:04 p.m.