Files in LaMa

Fast Numerical Maximum Likelihood Estimation for Latent Markov Models

README.md R/RcppExports.R R/distribution_functions.R R/sdreportMC.R R/data.R R/model_matrix_functions.R R/tpm_functions.R R/residual_functions.R R/stationary_functions.R R/qreml_functions.R R/hsmm_functions_old.R R/helper_functions.R R/LaMa-package.R R/forward_algorithms.R R/decoding_functions.R inst/doc/Continuous_time_HMMs.Rmd inst/doc/Inhomogeneous_HMMs.R inst/doc/MMMPPs.R inst/doc/Longitudinal_data.Rmd inst/doc/Periodic_HMMs.Rmd inst/doc/Penalised_splines.Rmd inst/doc/Continuous_time_HMMs.R inst/doc/LaMa_and_RTMB.Rmd inst/doc/State_space_models.Rmd inst/doc/Intro_to_LaMa.R inst/doc/MMMPPs.Rmd inst/doc/HSMMs.R inst/doc/Longitudinal_data.R inst/doc/Intro_to_LaMa.Rmd inst/doc/Periodic_HMMs.R inst/doc/Inhomogeneous_HMMs.Rmd inst/doc/LaMa_and_RTMB.R inst/doc/HSMMs.Rmd inst/doc/Penalised_splines.R inst/doc/State_space_models.R tests/testthat.R tests/testthat/test-tpm.R vignettes/Continuous_time_HMMs.Rmd vignettes/Longitudinal_data.Rmd vignettes/Periodic_HMMs.Rmd vignettes/Penalised_splines.Rmd vignettes/LaMa_and_RTMB.Rmd vignettes/State_space_models.Rmd vignettes/MMMPPs.Rmd vignettes/Intro_to_LaMa.Rmd vignettes/Inhomogeneous_HMMs.Rmd vignettes/HSMMs.Rmd man/viterbi.Rd man/tpm_p.Rd man/tpm_g2.Rd man/dirichlet.Rd man/minmax0_smooth.Rd man/stateprobs_g.Rd man/dgmrf2.Rd man/tpm_hsmm2.Rd man/tpm_phsmm2.Rd man/forward_hsmm.Rd man/stateprobs_p.Rd man/viterbi_g.Rd man/tpm_emb_g.Rd man/forward_g.Rd man/make_matrices_dens.Rd man/cosinor.Rd man/smooth_dens_construct.Rd man/tpm_thinned.Rd man/make_matrices_old.Rd man/logLik.qremlModel.Rd man/LaMa-package.Rd man/wrpcauchy.Rd man/gamma2.Rd man/predict.LaMa_matrices.Rd man/minmax.Rd man/tpm.Rd man/generator.Rd man/forward_p.Rd man/viterbi_p.Rd man/stationary_cont.Rd man/pseudo_res.Rd man/tpm_phsmm.Rd man/qreml_old.Rd man/skewnorm.Rd man/penalty_uni.Rd man/trigBasisExp.Rd man/process_hid_formulas.Rd man/forward.Rd man/stationary_sparse.Rd man/trex.Rd man/tpm_ihsmm.Rd man/vm.Rd man/stationary.Rd man/pred_matrix.Rd man/forward_sp.Rd man/ddwell.Rd man/pseudo_res_discrete.Rd man/grapes-sp-grapes.Rd man/forward_s.Rd man/tpm_hsmm.Rd man/summary.qremlModel.Rd man/sdreportMC.Rd man/calc_trackInd.Rd man/forward_ihsmm.Rd man/qreml.Rd man/tpm_cont.Rd man/nessi.Rd man/sdreport_outer.Rd man/stateprobs.Rd man/forward_phsmm.Rd man/stationary_p.Rd man/zero_inflate.Rd man/plot.LaMaResiduals.Rd man/penalty2.Rd man/tpm_emb.Rd man/stationary_p_sparse.Rd man/penalty.Rd man/gdeterminant.Rd man/make_matrices.Rd man/tpm_g.Rd