Tools for the Analysis of Ecosystem Metabolism

calc.lw.net | Estimate net long wave heat radiation |

calc.zeng | Estimate sensible and latent heat fluxes |

getSchmidt | Returns Schmidt number for a specific gas at a given... |

get.Ts | gets surface water temperatures |

get.vars | subsets data.frame according to header names |

has.vars | tests data.frame for column names |

is.day | determines if measurement was taken during the daytime |

is.night | determines if measurement was taken during the night |

k600.2.kGAS | Returns the gas exchange velocity for gas of interest w/ no... |

k.read | Returns a timeseries of gas exchange velocity |

k.read.base | Returns a timeseries of gas exchange velocity |

load.all.data | Attemps to load and merge all timeseries data for a given... |

load.meta | Loads a metadata file from the specified path |

metab | Calculate metabolism |

metab.bayesian | Metabolism model based on a bayesian parameter estimation... |

metab.bookkeep | Metabolism model based on simple day/night summation... |

metab.kalman | Metabolism calculated from parameters estimated using a... |

metab.mle | Metabolism calculated from the maximum likelihood estimates... |

metab.ols | Metabolism model based on a ordinary least squares parameter... |

o2.at.sat | Calculates the equilibrium saturation concentration of oxygen... |

par.to.sw | Convert PAR to shortwave |

rmv.vars | subsets data.frame according to header names |

sun.rise.set | Calculates the time of sunrise and sunset |

sw.to.par | Convert shortwave radiation to PAR |

temp.kalman | Smooth temperature time series using a Kalman filter/... |

var.indx | finds matching column names in data.frame |

watts.in | Simple estimate of energy gained by a layer of water |

wind.scale | Wind Scaling U10 - exponential conversion to 10m wind speed |

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