createLipidDB: Customizable lipid DBs creator

Description Usage Arguments Details Value Author(s) Examples

View source: R/additionalFunctions.R

Description

It allows to create easy-customizable lipid DBs for annotation with LipidMS package.

Usage

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createLipidDB(lipid, chains, chains2)

Arguments

lipid

character value indicating the class of lipid. See Details.

chains

character vector indicating the FA chains to be employed

chains2

character vector containing the sphingoid bases to be employed if required.

Details

lipidClass argument needs to be one of the following character values: "Cer", "CerP", "GlcCer", "SM", "Carnitine", "CE", "FA", "HFA", "Sph" (sphingoid bases), "SphP", "MG", "LPA", , "LPC", "LPE", "LPG", "LPI", "LPS", "FAHFA", "DG", "PC", "PE", "PG", "PI", "PS", "PA", "TG", "CL" or "all".

Value

List with the requested dbs (data frames)

Author(s)

M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>

Examples

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fas <- c("8:0", "10:0", "12:0", "14:0", "14:1", "15:0", "16:0", "16:1",
"17:0", "18:0", "18:1", "18:2", "18:3", "18:4", "20:0", "20:1", "20:2",
"20:3", "20:4", "20:5", "22:0", "22:1", "22:2", "22:3", "22:4", "22:5",
"22:6", "24:0", "24:1", "26:0")
sph <- c("16:0", "16:1", "18:0", "18:1")
newdb <- createLipidDB(lipid = "PC", chains = fas, chains2 = sph)

LipidMS documentation built on July 7, 2021, 9:07 a.m.