createLipidDB: Customizable lipid DBs creator

In LipidMS: Lipid Annotation for LC-MS/MS DDA or DIA Data

Customizable lipid DBs creator

Description

It allows to create easy-customizable lipid DBs for annotation with LipidMS package.

Usage

createLipidDB(lipid, chains, chains2)

Arguments

lipid	character value indicating the class of lipid. See Details.
chains	character vector indicating the FA chains to be employed
chains2	character vector containing the sphingoid bases to be employed if required.

Details

lipidClass argument needs to be one of the following character values: "Cer", "CerP", "GlcCer", "SM", "Carnitine", "CE", "FA", "HFA", "Sph" (sphingoid bases), "SphP", "MG", "LPA", , "LPC", "LPE", "LPG", "LPI", "LPS", "FAHFA", "DG", "PC", "PE", "PG", "PI", "PS", "PA", "TG", "CL" or "all".

Value

List with the requested dbs (data frames)

Author(s)

M Isabel Alcoriza-Balaguer <[e-mail]>

Examples

fas <- c("8:0", "10:0", "12:0", "14:0", "14:1", "15:0", "16:0", "16:1",
"17:0", "18:0", "18:1", "18:2", "18:3", "18:4", "20:0", "20:1", "20:2",
"20:3", "20:4", "20:5", "22:0", "22:1", "22:2", "22:3", "22:4", "22:5",
"22:6", "24:0", "24:1", "26:0")
sph <- c("16:0", "16:1", "18:0", "18:1")
newdb <- createLipidDB(lipid = "PC", chains = fas, chains2 = sph)

LipidMS documentation built on March 18, 2022, 7:14 p.m.