combineChains: Combine chain fragments that could belong to the same...
In LipidMS: Lipid Annotation for LC-MS/MS DDA or DIA Data
View source: R/subfunctionsIdentification.R
combineChains R Documentation
Combine chain fragments that could belong to the same precursor.
Description
It calculates combinations of chain fragments that sum up the same number of
carbons and double bounds as the precursor.
Usage
combineChains(candidates, nchains, sn1, sn2, sn3, sn4)
Arguments
candidates
candidates data frame. Output of findCandidates.
nchains
number of chains of the targeted lipid class.
sn1
list of chain fragments identified for sn1 position. Output of
chainFrags.
sn2
list of chain fragments identified for sn2 position. Output of
chainFrags. If required.
sn3
list of chain fragments identified for sn3 position. Output of
chainFrags. If required.
sn4
list of chain fragments identified for sn4 position. Output of
chainFrags. If required.
Value
List of data frames with candidate chains structures.
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
LipidMS documentation built on May 29, 2024, 11:24 a.m.
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View source: R/subfunctionsIdentification.R
| combineChains | R Documentation |
Combine chain fragments that could belong to the same precursor.
Description
It calculates combinations of chain fragments that sum up the same number of carbons and double bounds as the precursor.
Usage
combineChains(candidates, nchains, sn1, sn2, sn3, sn4)
Arguments
candidates |
candidates data frame. Output of findCandidates. |
nchains |
number of chains of the targeted lipid class. |
sn1 |
list of chain fragments identified for sn1 position. Output of chainFrags. |
sn2 |
list of chain fragments identified for sn2 position. Output of chainFrags. If required. |
sn3 |
list of chain fragments identified for sn3 position. Output of chainFrags. If required. |
sn4 |
list of chain fragments identified for sn4 position. Output of chainFrags. If required. |
Value
List of data frames with candidate chains structures.
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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