Files in LoopRig

Integration and Analysis of Chromatin Loop Data

NEWS.md

MD5

README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

R/LoopsToRanges.R R/StackedElements.R R/ScaffoldElements.R R/DropLoops.R R/LinkedElements.R R/ElementsToRanges.R R/ConsensusLoops.R R/ExportBED.R vignettes/LoopRig-Tutorial.Rmd man/ScaffoldElements.Rd man/ExportBED.Rd man/ElementsToRanges.Rd man/LoopsToRanges.Rd man/ConsensusLoops.Rd man/StackedElements.Rd man/LinkedElements.Rd man/DropLoops.Rd

man/figures/looprig_logo.png

tests/testthat.R tests/testthat/test-ExportBED.R tests/testthat/test-StackedElements.R tests/testthat/test-LinkedElements.R tests/testthat/test-DropLoops.R tests/testthat/test-LoopsToRanges.R tests/testthat/test-ElementsToRanges.R tests/testthat/test-ConsensusLoops.R tests/testthat/test-ScaffoldElements.R inst/doc/LoopRig-Tutorial.Rmd

inst/doc/LoopRig-Tutorial.html

inst/doc/LoopRig-Tutorial.R

inst/extdata/loops/spleen_hg19.bedpe

inst/extdata/loops/ovary_hg19_mcol.bedpe

inst/extdata/loops/ovary_hg19.bedpe

inst/extdata/loops/pancreas_hg19.bedpe

inst/extdata/loops/exp_bed_dummy.bed

inst/extdata/elements/promoters.bed

inst/extdata/elements/enhancers.bed

inst/extdata/elements/exp_bed_dummy.bed

LoopRig documentation built on Jan. 11, 2020, 9:27 a.m.