nc: Calculate Network Natural Connectivity

In LorMe: Lightening One-Code Resolving Microbial Ecology Solution

Calculate Network Natural Connectivity

Description

Calculate Network Natural Connectivity

Usage

nc(adj_matrix)

Arguments

adj_matrix

Adjacency data frame or matrix. Can be calculated from network_analysis

Value

Numeric value of natural connectivity

Examples

{
  ### Data preparation ###
  data("Two_group")

  ### One input network analysis ###
  network_results <- network_analysis(
    taxobj = Two_group,
    taxlevel = "Base",
    reads = FALSE,
    n = 10,
    threshold = 0.6
  )

  # Convert network results to a data frame for the adjacency matrix
  network_matrix <- as.data.frame(network_results[[3]])  # Complete adjacency matrix

  # Check initial natural connectivity
  nc_initial <- nc(network_matrix)
  print(nc_initial)  # Print the initial natural connectivity
}

LorMe documentation built on Sept. 13, 2024, 9:07 a.m.