Multi-Modal Similarity Matrix Factorization for Integrative Multi-Omics Data Analysis

affinityMatrix | To calculate the similarity matrix |

Cal_NMI | calculate the normalized mutual information. |

cost | Calculate the cost |

dist2bin | Calculate the agreement-based measurement |

dist2chi | Calculate the chi-squared distance |

dist2eu | Calculate the Euclidean distance |

initialization | initialize the sub-matrix Ci into alpha*Li by SVD |

initialize_WL | Initialize from the similairty matrix list |

M2SMF | the main part for M2SMF and clustering result |

new_modularity | Calculate the modularity |

simu_data_gen | Generate simulated data |

Standard_Normalization | Normalize the input matrix by column |

update_alpha | the function to update alpha |

update_L | the function to update Li, for i=1,2,...,N |

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