Man pages for M2SMF
Multi-Modal Similarity Matrix Factorization for Integrative Multi-Omics Data Analysis
| affinityMatrix | To calculate the similarity matrix |
| Cal_NMI | calculate the normalized mutual information. |
| cost | Calculate the cost |
| dist2bin | Calculate the agreement-based measurement |
| dist2chi | Calculate the chi-squared distance |
| dist2eu | Calculate the Euclidean distance |
| initialization | initialize the sub-matrix Ci into alpha*Li by SVD |
| initialize_WL | Initialize from the similairty matrix list |
| M2SMF | the main part for M2SMF and clustering result |
| new_modularity | Calculate the modularity |
| simu_data_gen | Generate simulated data |
| Standard_Normalization | Normalize the input matrix by column |
| update_alpha | the function to update alpha |
| update_L | the function to update Li, for i=1,2,...,N |
