affinityMatrix: To calculate the similarity matrix
In M2SMF: Multi-Modal Similarity Matrix Factorization for Integrative Multi-Omics Data Analysis
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/affinityMatrix.R
Description
calculate the affinity matrix from the diff matrix with 20 neighbors
Usage
1
affinityMatrix(Diff, K = 20, sigma = 0.5)
Arguments
Diff
A diff matrix
K
The number of neighbors in consideration
sigma
A parameter to determine the scale
Value
W The similarity matrix
Author(s)
Xiaoyao Yin
Examples
1
2
3
data_list <- simu_data_gen()
Diff <- dist2eu(Standard_Normalization(data_list[[1]]),Standard_Normalization(data_list[[1]]))
simi <- affinityMatrix(Diff,20,0.5)
M2SMF documentation built on Jan. 11, 2020, 9:28 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
View source: R/affinityMatrix.R
Description
calculate the affinity matrix from the diff matrix with 20 neighbors
Usage
1 | affinityMatrix(Diff, K = 20, sigma = 0.5)
|
Arguments
Diff |
A diff matrix |
K |
The number of neighbors in consideration |
sigma |
A parameter to determine the scale |
Value
W The similarity matrix
Author(s)
Xiaoyao Yin
Examples
1 2 3 | data_list <- simu_data_gen()
Diff <- dist2eu(Standard_Normalization(data_list[[1]]),Standard_Normalization(data_list[[1]]))
simi <- affinityMatrix(Diff,20,0.5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.