API for MAAPER
Analysis of Alternative Polyadenylation Using 3' End-Linked Reads
| Global functions | |
|---|---|
| est_alp_forward | Source code |
| est_alp_forward_pred | Source code |
| get_RID | Source code |
| get_RID_sample | Source code |
| get_RLD | Source code |
| get_RLD_sample | Source code |
| get_de_alt | Source code |
| get_de_null | Source code |
| get_loglik | Source code |
| get_loglik_pred | Source code |
| get_pas_by_gene_single | Source code |
| get_pdist_singlePAS | Source code |
| get_reads_prob | Source code |
| get_reads_prob_predict | Source code |
| get_reads_stranded | Source code |
| gtf_to_exons_gr | Source code |
| maaper | Man page Source code |
| maaper_predict | Source code |
| maaper_write | Source code |
| main | Source code |
| main_paired | Source code |
| main_predict | Source code |
| mapper_write | Source code |
| paired_test | Source code |
| select_forward | Source code |
| select_forward_pred | Source code |
| trunc_matrix | Source code |
| wrap | Source code |
| wrap_predict | Source code |
| write_bed | Source code |
