mcl_mtrx_grps: Final output of AnalyzeOrthoMCL
In MAGNAMWAR: A Pipeline for Meta-Genome Wide Association
Description
A matrix containing the final results of statistical analysis.
Usage
1
Format
A matrix with 10 rows and 7 variables:
- OG
taxa cluster id, as defined by OrthoMCL
- pval1
p-value, based on presence absence
- corrected_pval1
Bonferroni p-value, corrected by number of tests
- mean_OGContain
mean of all taxa phenotypes in that OG
- mean_OGLack
mean of all taxa phenotypes not in that OG
- taxa_contain
taxa in that cluster
- taxa_miss
taxa not in that cluster
MAGNAMWAR documentation built on May 2, 2019, 6:42 a.m.
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Description
A matrix containing the final results of statistical analysis.
Usage
1 |
Format
A matrix with 10 rows and 7 variables:
- OG
taxa cluster id, as defined by OrthoMCL
- pval1
p-value, based on presence absence
- corrected_pval1
Bonferroni p-value, corrected by number of tests
- mean_OGContain
mean of all taxa phenotypes in that OG
- mean_OGLack
mean of all taxa phenotypes not in that OG
- taxa_contain
taxa in that cluster
- taxa_miss
taxa not in that cluster
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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