MAR1: Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
Version 1.0

The MAR1 package provides basic tools for preparing ecological community time-series data for MAR modeling, building MAR-1 models via model selection and bootstrapping, and visualizing and exporting model results. It is intended to make MAR analysis (sensu Ives et al. (2003) Analysis of community stability and ecological interactions from time-series data) a more accessible tool for anyone studying community dynamics. The user need not necessarily be familiar with time-series modeling or command-based statistics programs such as R.

AuthorLindsay P. Scheef
Date of publication2013-03-04 07:47:36
MaintainerLindsay P. Scheef <scheef@utexas.edu>
LicenseGPL-2
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MAR1")

Getting started

Package overview

Popular man pages

export.MAR: Export all elements of a MAR object to a new directory
L4.AllDates: L4 plankton abundance time-series
MAR1-package: Multivariate Autoregressive Modeling for Analysis of...
plot.MAR: Plot coefficients of a MAR model
plot.MARtop: Plot coefficients of top MAR models
run.mar: Initiate MAR analysis
summary.MAR: Produce a summary of a MAR model
See all...

All man pages Function index File listing

Man pages

export.MAR: Export all elements of a MAR object to a new directory
hist.MARtop: Plot histogram of AIC values of top MAR models
L4.AllDates: L4 plankton abundance time-series
L4.mar: L4 plankton abundance time-series prepared for MAR modeling
MAR1-package: Multivariate Autoregressive Modeling for Analysis of...
plot.MAR: Plot coefficients of a MAR model
plot.MARtop: Plot coefficients of top MAR models
prepare.data: Prepare data frame for MAR analysis
print.MAR: Print output of a MAR model
print.MARsummary: Print the summary of a MAR model
run.mar: Initiate MAR analysis
ss_mar1: Fit a state-space MAR model using the MARSS package.
summary.MAR: Produce a summary of a MAR model

Functions

L4.AllDates Man page
L4.mar Man page
MAR1 Man page
MAR1-package Man page
bestfit.bootstrap Source code
bestfit.lstsqr Source code
bestfit.search.exhaustive Source code
bestfit.search.exhaustive.true Source code
bestfit.search.fwdstep Source code
bestfit.search.random Source code
export.MAR Man page Source code
fun.restrict.BC Source code
fun.set.variables Source code
hist.MARtop Man page Source code
plot.MAR Man page Source code
plot.MARtop Man page Source code
prepare.data Man page Source code
print.MAR Man page Source code
print.MARsummary Man page Source code
run.mar Man page Source code
ss.mar1 Man page Source code
stab.stats Source code
summary.MAR Man page Source code
top.bestfit Source code

Files

MD5
R
R/top.bestfit.R
R/stab.stats.R
R/ss_mar1.R
R/run.mar.R
R/prepare.data.R
R/method.summary.R
R/method.summary.print.R
R/method.plot.MARtop.R
R/method.plot.MAR.R
R/method.MAR.print.R
R/fun.set.variables.R
R/fun.restrict.BC.R
R/export.MAR.R
R/bestfit.search.random.R
R/bestfit.search.nonrandom.R
R/bestfit.search.exhaustive.trueB.R
R/bestfit.search.exhaustive.R
R/bestfit.lstsqr.R
R/bestfit.bootstrap.R
NAMESPACE
man
man/summary.MAR.Rd
man/ss_mar1.Rd
man/run.mar.Rd
man/print.MARsummary.Rd
man/print.MAR.Rd
man/prepare.data.Rd
man/plot.MARtop.Rd
man/plot.MAR.Rd
man/MAR1-package.Rd
man/L4.mar.Rd
man/L4.AllDates.Rd
man/hist.MARtop.Rd
man/export.MAR.Rd
inst
inst/CITATION
DESCRIPTION
data
data/L4.mar.rda
data/L4.AllDates.rda
MAR1 documentation built on May 19, 2017, 2 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.