MAR1: Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data

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The MAR1 package provides basic tools for preparing ecological community time-series data for MAR modeling, building MAR-1 models via model selection and bootstrapping, and visualizing and exporting model results. It is intended to make MAR analysis (sensu Ives et al. (2003) Analysis of community stability and ecological interactions from time-series data) a more accessible tool for anyone studying community dynamics. The user need not necessarily be familiar with time-series modeling or command-based statistics programs such as R.

Author
Lindsay P. Scheef
Date of publication
2013-03-04 07:47:36
Maintainer
Lindsay P. Scheef <scheef@utexas.edu>
License
GPL-2
Version
1.0

View on CRAN

Man pages

export.MAR
Export all elements of a MAR object to a new directory
hist.MARtop
Plot histogram of AIC values of top MAR models
L4.AllDates
L4 plankton abundance time-series
L4.mar
L4 plankton abundance time-series prepared for MAR modeling
MAR1-package
Multivariate Autoregressive Modeling for Analysis of...
plot.MAR
Plot coefficients of a MAR model
plot.MARtop
Plot coefficients of top MAR models
prepare.data
Prepare data frame for MAR analysis
print.MAR
Print output of a MAR model
print.MARsummary
Print the summary of a MAR model
run.mar
Initiate MAR analysis
ss_mar1
Fit a state-space MAR model using the MARSS package.
summary.MAR
Produce a summary of a MAR model

Files in this package

MAR1
MAR1/MD5
MAR1/R
MAR1/R/top.bestfit.R
MAR1/R/stab.stats.R
MAR1/R/ss_mar1.R
MAR1/R/run.mar.R
MAR1/R/prepare.data.R
MAR1/R/method.summary.R
MAR1/R/method.summary.print.R
MAR1/R/method.plot.MARtop.R
MAR1/R/method.plot.MAR.R
MAR1/R/method.MAR.print.R
MAR1/R/fun.set.variables.R
MAR1/R/fun.restrict.BC.R
MAR1/R/export.MAR.R
MAR1/R/bestfit.search.random.R
MAR1/R/bestfit.search.nonrandom.R
MAR1/R/bestfit.search.exhaustive.trueB.R
MAR1/R/bestfit.search.exhaustive.R
MAR1/R/bestfit.lstsqr.R
MAR1/R/bestfit.bootstrap.R
MAR1/NAMESPACE
MAR1/man
MAR1/man/summary.MAR.Rd
MAR1/man/ss_mar1.Rd
MAR1/man/run.mar.Rd
MAR1/man/print.MARsummary.Rd
MAR1/man/print.MAR.Rd
MAR1/man/prepare.data.Rd
MAR1/man/plot.MARtop.Rd
MAR1/man/plot.MAR.Rd
MAR1/man/MAR1-package.Rd
MAR1/man/L4.mar.Rd
MAR1/man/L4.AllDates.Rd
MAR1/man/hist.MARtop.Rd
MAR1/man/export.MAR.Rd
MAR1/inst
MAR1/inst/CITATION
MAR1/DESCRIPTION
MAR1/data
MAR1/data/L4.mar.rda
MAR1/data/L4.AllDates.rda