NaiveBayesModel: Naive bayes model

In MBMethPred: Medulloblastoma Subgroups Prediction

Naive bayes model

Description

A function to train a Naive Bayes model to classify medulloblastoma subgroups using DNA methylation beta values (Illumina Infinium HumanMethylation450). Prediction is followed by training if new data is provided.

Arguments

SplitRatio	Train and test split ratio. A value greater or equal to zero and less than one.
CV	The number of folds for cross-validation. It should be greater than one.
Threshold	The threshold for deciding class probability. A value greater or equal to zero and less than one.
NCores	The number of cores for parallel computing.
NewData	A methylation beta values input from the ReadMethylFile function.

Value

A list

Examples

set.seed(123)
nb <- NaiveBayesModel(SplitRatio = 0.8,
                      CV = 2,
                      Threshold = 0.8,
                      NCores = 1,
                      NewData = NULL)

MBMethPred documentation built on Sept. 18, 2023, 5:13 p.m.