Run Time-Course MBNMA Models

add_index | Add follow-up time and arm indices to a dataset |

alog_pcfb | Studies of alogliptin for lowering blood glucose... |

compound.beta | Prepares beta time-course parameters for mb.write() |

devplot | Plot deviance contributions from an MBNMA model |

fitplot | Plot fitted values from MBNMA model |

genmaxcols | Get large vector of distinct colours using Rcolorbrewer |

gen.parameters.to.save | Automatically generate parameters to save for a dose-response... |

get.earliest.time | Create a dataset with the earliest time point only |

getjagsdata | Prepares data for JAGS |

get.latest.time | Create a dataset with the latest time point only |

get.model.vals | Get MBNMA model values |

get.prior | Get current priors from JAGS model code |

goutSUA_CFB | Studies of treatments for reducing serum uric acid in... |

goutSUA_CFBcomb | Studies of combined treatments for reducing serum uric acid... |

inconsistency.loops | Identify comparisons in loops that fulfill criteria for... |

mb.comparisons | Identify unique comparisons within a network (identical to... |

mb.emax | Run MBNMA model with an Emax time-course function (without a... |

mb.emax.hill | Run MBNMA model with an Emax time-course function and a Hill... |

mb.exponential | Run MBNMA model with an exponential time-course function |

mb.fract.first | Run MBNMA model with a first-order fractional polynomial... |

mb.fract.second | Run MBNMA model with a second-order fractional polynomial... |

mb.linear | Run MBNMA model with a linear time-course function |

mb.make.contrast | Convert arm-based MBNMA data to contrast data |

mb.network | Create an mb.network object |

MBNMAtime-package | MBNMAtime for Model-Based Network Meta-Analysis of... |

mb.nodesplit | Perform node-splitting on a MBNMA time-course network |

mb.nodesplit.comparisons | Identify comparisons in time-course MBNMA datasets that... |

mb.piecelinear | Run MBNMA model with a piecewise linear time-course function |

mb.quadratic | Run MBNMA model with a quadratic time-course function |

mb.run | Run MBNMA time-course models |

mb.update | Update MBNMA to obtain deviance contributions or fitted... |

mb.validate.data | Validates that a dataset fulfills requirements for MBNMA |

mb.write | Write MBNMA time-course models JAGS code |

obesityBW_CFB | Studies of treatments for reducing body weight in patients... |

osteopain | Studies of pain relief medications for osteoarthritis |

pDcalc | Calculate plugin pD from a JAGS model with univariate... |

plot.mbnma | Forest plot for results from time-course MBNMA models |

plot.mb.predict | Plots predicted responses from a time-course MBNMA model |

plot.mb.rank | Plot histograms of rankings from MBNMA models |

predict.mbnma | Predict responses over time in a given population based on... |

print.mb.network | Print mb.network information to the console |

print.mb.nodesplit | Prints basic results from a node-split to the console |

print.mb.predict | Print summary information from an mb.predict object |

print.mb.rank | Prints a summary of rankings for each parameter |

radian.rescale | Calculate position of label with respect to vertex location... |

rank | Set rank as a method |

rankauc | Calculates ranking probabilities for AUC from a time-course... |

rank.mbnma | Rank parameters from a time-course MBNMA |

ref.comparisons | Identify unique comparisons relative to study reference... |

ref.synth | Synthesise single arm studies with repeated observations of... |

ref.validate | Checks the validity of ref.resp if given as data frame |

replace.prior | Replace original priors in an MBNMA model with new priors |

summary.mbnma | Print summary MBNMA results to the console |

summary.mb.nodesplit | Takes node-split results and produces summary data frame |

summary.mb.predict | Prints summary of mb.predict object |

time.fun | Write time-course function component of JAGS code for MBNMA... |

timeplot | Plot raw responses over time by treatment or class |

write.alpha | Adds sections of JAGS code for an MBNMA model that correspond... |

write.beta | Adds sections of JAGS code for an MBNMA model that correspond... |

write.check | Checks validity of arguments for mb.write |

write.cor | Adds correlation between time-course relative effects |

write.fract.poly | Adds additional sections of JAGS code for an MBNMA model... |

write.inserts | Writes insert points for RegEx in MBNMA JAGS code |

write.likelihood | Adds sections of JAGS code for an MBNMA model that correspond... |

write.model | Write the basic JAGS model code for MBNMA to which other... |

write.piece.fract | Adds additional sections of JAGS code for an MBNMA model... |

write.piecelinear | Adds additional sections of JAGS code for an MBNMA model... |

write.ref.synth | Write MBNMA time-course models JAGS code for synthesis of... |

write.remove.loops | Removes any loops from MBNMA model JAGS code that do not... |

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