MDR: Detect gene-gene interactions using multifactor dimensionality reduction

Performs multifactor dimensionality reduction (MDR) to detect potential gene-gene interactions in case-control studies.

Author
Stacey Winham
Date of publication
2012-03-12 06:05:04
Maintainer
Stacey Winham <stacey.winham@gmail.com>
License
GPL-2
Version
1.2

View on CRAN

Man pages

boot.error
Function to calculate a post-hoc prediction estimate of...
compare
Function for internal use only ...
mdr
Function to perform MDR on a dataset for a given set of loci
mdr1
Sample data for MDR package for n=250, p=25
mdr2
Sample data for MDR package for n=250, p=100
mdr.3WS
A function to perform MDR on a dataset using the three-way...
mdr.ca.adj
Function to calculate a post-hoc adjusted prediction estimate...
mdr.cv
A function to perform MDR on a dataset using k-fold...
mdr.hr
Function to estimate the accuracy of an MDR model given...
MDR-package
Detect gene-gene interactions using multifactor...
permute.mdr
Function to perform a permutation test after fitting an MDR...
plot.mdr
Plotting the results of an MDR model
predict.mdr
MDR model predictions
summary.mdr
Summarizing the results of an MDR model
test
Sample data for MDR package for n=1000, p=5000
train
Sample data for MDR package for n=1000, p=5000

Files in this package

MDR
MDR/MD5
MDR/R
MDR/R/mdr.r
MDR/NAMESPACE
MDR/man
MDR/man/train.Rd
MDR/man/test.Rd
MDR/man/summary.mdr.Rd
MDR/man/predict.mdr.Rd
MDR/man/plot.mdr.Rd
MDR/man/permute.mdr.Rd
MDR/man/mdr2.Rd
MDR/man/mdr1.Rd
MDR/man/mdr.Rd
MDR/man/mdr.hr.Rd
MDR/man/mdr.cv.Rd
MDR/man/mdr.ca.adj.Rd
MDR/man/mdr.3WS.Rd
MDR/man/MDR-package.Rd
MDR/man/compare.Rd
MDR/man/boot.error.Rd
MDR/LICENCE
MDR/DESCRIPTION
MDR/data
MDR/data/train.txt.gz
MDR/data/test.txt.gz
MDR/data/mdr2.txt.gz
MDR/data/mdr1.txt.gz
MDR/data/datalist
MDR/COPYING