gather_summary_file: gather_summary_file

In MGMS2: 'MGMS2' for Polymicrobial Samples

Description

This function combines output files from summarize_monospectra.

Usage

gather_summary_file(directory)

Arguments

directory

A directory that contains summary files from summarize_monospectra.

Value

A list of combined summaries of mass spectra (data frames) from summarize_monospectra and the corresponding species (a vector).

Examples

spectra.processed.A <- process_monospectra(
   file=system.file("extdata", "listA.txt", package="MGMS2"),
   mass.range=c(1000,2200))
spectra.processed.B <- process_monospectra(
   file=system.file("extdata", "listB.txt", package="MGMS2"),
   mass.range=c(1000,2200))
spectra.processed.C <- process_monospectra(
   file=system.file("extdata", "listC.txt", package="MGMS2"),
   mass.range=c(1000,2200))
spectra.mono.summary.A <- summarize_monospectra(
   processed.obj=spectra.processed.A,
   species='A', directory=tempdir())
spectra.mono.summary.B <- summarize_monospectra(
   processed.obj=spectra.processed.B,
   species='B', directory=tempdir())
spectra.mono.summary.C <- summarize_monospectra(
   processed.obj=spectra.processed.C,
   species='C', directory=tempdir())
summary <- gather_summary_file(directory=tempdir())

MGMS2 documentation built on April 24, 2020, 9:06 a.m.