MHTdiscrete: Multiple Hypotheses Testing for Discrete Data
Version 0.1.3

A Comprehensive tool for almost all existing multiple testing methods for discrete data. The package also provides some novel multiple testing procedures controlling FWER/FDR for discrete data. Given discrete p-values and their domains, the [method].p.adjust function returns adjusted p-values, which can be used to compare with the nominal significant level alpha and make decisions. For users' convenience, the functions also provide the output option for printing decision rules.

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AuthorYalin Zhu, Wenge Guo
Date of publication2017-02-08 12:46:17
MaintainerYalin Zhu <yalin.zhu@outlook.com>
LicenseGPL (>= 2)
Version0.1.3
URL https://allen.shinyapps.io/MTPs/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MHTdiscrete")

Man pages

getPval: Calculating p-values for discrete data
GTBH.p.adjust: The adjusted p-values for Gilbert-Tarone-BH step-up FDR...
GTBY.p.adjust: The adjusted p-values for Gilbert-Tarone-BY step-up FDR...
MBH.p.adjust: The adjusted p-values for Modified Benjamini-Hochberg (BH)...
MBL.p.adjust: The adjusted p-values for Modified Benjamini-Liu (BL)...
MBonf.p.adjust: The adjusted p-values for Modified Bonferroni single-step...
MBY.p.adjust: The adjusted p-values for Modified Benjamini-Yekutieli (BY)...
MHoch.p.adjust: The adjusted p-values for Modified Hochberg step-up FWER...
MHolm.p.adjust: The adjusted p-values for Modified Holm step-down FWER...
MHTdiscrete: MHTdiscrete: A package for Multiple Hypotheses Testing for...
MixBonf.p.adjust: The adjusted p-values for Mixed Bonferroni single-step FWER...
Roth.p.adjust: The adjusted p-values for Roth's step-up FWER controlling...
Roth.rej: The number of rejected hypotheses for Roth's step-up FWER...
Sidak.p.adjust: The adjusted p-values for Sidak single-step FWER controlling...
Tarone.p.adjust: The adjusted p-values for Tarone's single-step FWER...
TH.p.adjust: The adjusted p-values for Tarone-Holm step-down FWER...

Functions

GTBH.p.adjust Man page Source code
GTBY.p.adjust Man page Source code
MBH.p.adjust Man page Source code
MBL.p.adjust Man page Source code
MBY.p.adjust Man page Source code
MBonf.p.adjust Man page Source code
MHTdiscrete Man page
MHTdiscrete-package Man page
MHoch.p.adjust Man page Source code
MHolm.p.adjust Man page Source code
MixBonf.p.adjust Man page Source code
Roth.p.adjust Man page Source code
Roth.rej Man page Source code
Sidak.p.adjust Man page Source code
TH.p.adjust Man page Source code
Tarone.p.adjust Man page Source code
getPval Man page Source code

Files

NAMESPACE
R
R/FDRSD.R
R/FWERSS.R
R/FWERSD.R
R/Pval.R
R/FWERSU.R
R/MHTdiscrete.R
R/FDRSU.R
MD5
DESCRIPTION
man
man/MBonf.p.adjust.Rd
man/TH.p.adjust.Rd
man/MHTdiscrete.Rd
man/Roth.p.adjust.Rd
man/GTBY.p.adjust.Rd
man/Tarone.p.adjust.Rd
man/GTBH.p.adjust.Rd
man/MBL.p.adjust.Rd
man/MixBonf.p.adjust.Rd
man/Roth.rej.Rd
man/MHoch.p.adjust.Rd
man/getPval.Rd
man/MBY.p.adjust.Rd
man/MHolm.p.adjust.Rd
man/MBH.p.adjust.Rd
man/Sidak.p.adjust.Rd
MHTdiscrete documentation built on May 19, 2017, 7:47 a.m.