MHTdiscrete: Multiple Hypotheses Testing for Discrete Data

A Comprehensive tool for almost all existing multiple testing methods for discrete data. The package also provides some novel multiple testing procedures controlling FWER/FDR for discrete data. Given discrete p-values and their domains, the [method].p.adjust function returns adjusted p-values, which can be used to compare with the nominal significant level alpha and make decisions.

Author
Yalin Zhu, Wenge Guo
Date of publication
2016-12-02 22:44:51
Maintainer
Yalin Zhu <yalin.zhu@outlook.com>
License
GPL (>= 2)
Version
0.1.2
URLs

View on CRAN

Man pages

getPval
Calculating p-values for discrete data
GTBH.p.adjust
The adjusted p-values for Gilbert-Tarone-BH step-up FDR...
GTBY.p.adjust
The adjusted p-values for Gilbert-Tarone-BY step-up FDR...
MBH.p.adjust
The adjusted p-values for Modified Benjamini-Hochberg (BH)...
MBL.p.adjust
The adjusted p-values for Modified Benjamini-Liu (BL)...
MBonf.p.adjust
The adjusted p-values for Modified Bonferroni single-step...
MBY.p.adjust
The adjusted p-values for Modified Benjamini-Yekutieli (BY)...
MHoch.p.adjust
The adjusted p-values for Modified Hochberg step-up FWER...
MHolm.p.adjust
The adjusted p-values for Modified Holm step-down FWER...
MHTdiscrete
MHTdiscrete: A package for Multiple Hypotheses Testing for...
MixBonf.p.adjust
The adjusted p-values for Mixed Bonferroni single-step FWER...
Roth.p.adjust
The adjusted p-values for Roth's step-up FWER controlling...
Roth.rej
The number of rejected hypotheses for Roth's step-up FWER...
Sidak.p.adjust
The adjusted p-values for Sidak single-step FWER controlling...
Tarone.p.adjust
The adjusted p-values for Tarone's single-step FWER...
TH.p.adjust
The adjusted p-values for Tarone-Holm step-down FWER...

Files in this package

MHTdiscrete
MHTdiscrete/NAMESPACE
MHTdiscrete/R
MHTdiscrete/R/FDRSD.R
MHTdiscrete/R/FWERSS.R
MHTdiscrete/R/FWERSD.R
MHTdiscrete/R/Pval.R
MHTdiscrete/R/FWERSU.R
MHTdiscrete/R/MHTdiscrete.R
MHTdiscrete/R/FDRSU.R
MHTdiscrete/MD5
MHTdiscrete/DESCRIPTION
MHTdiscrete/man
MHTdiscrete/man/MBonf.p.adjust.Rd
MHTdiscrete/man/TH.p.adjust.Rd
MHTdiscrete/man/MHTdiscrete.Rd
MHTdiscrete/man/Roth.p.adjust.Rd
MHTdiscrete/man/GTBY.p.adjust.Rd
MHTdiscrete/man/Tarone.p.adjust.Rd
MHTdiscrete/man/GTBH.p.adjust.Rd
MHTdiscrete/man/MBL.p.adjust.Rd
MHTdiscrete/man/MixBonf.p.adjust.Rd
MHTdiscrete/man/Roth.rej.Rd
MHTdiscrete/man/MHoch.p.adjust.Rd
MHTdiscrete/man/getPval.Rd
MHTdiscrete/man/MBY.p.adjust.Rd
MHTdiscrete/man/MHolm.p.adjust.Rd
MHTdiscrete/man/MBH.p.adjust.Rd
MHTdiscrete/man/Sidak.p.adjust.Rd