ecoffs: ECOFF data
In MIC: Analysis of Antimicrobial Minimum Inhibitory Concentration Data
ecoffs R Documentation
ECOFF data
Description
A dataset containing the epidemiological cut-off values (ECOFFs) for
different antibiotics and microorganisms. Currently, only the ECOFF values
for Escherichia coli are included.
Usage
ecoffs
Format
ecoffs
A data frame with 85 rows and 25 columns:
- organism
Microorganism code in AMR::mo format
- antibiotic
Antibiotic code in AMR::ab format
0.002:512Counts of isolates in each concentration "bin"
- Distributions
see EUCAST documentation below
- Observations
Number of observations
(T)ECOFFsee EUCAST documentation below
Confidence intervalsee EUCAST documentation below
Source
EUCAST https://www.eucast.org/mic_and_zone_distributions_and_ecoffs
These data have (or this document, presentation or video has) been produced
in part under ECDC service contracts and made available by EUCAST at no cost
to the user and can be accessed on the EUCAST website www.eucast.org.
The views and opinions expressed are those of EUCAST at a given point in time.
EUCAST recommendations are frequently updated and the latest versions are available at www.eucast.org.
MIC documentation built on April 12, 2025, 2:26 a.m.
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| ecoffs | R Documentation |
ECOFF data
Description
A dataset containing the epidemiological cut-off values (ECOFFs) for different antibiotics and microorganisms. Currently, only the ECOFF values for Escherichia coli are included.
Usage
ecoffs
Format
ecoffs
A data frame with 85 rows and 25 columns:
- organism
Microorganism code in AMR::mo format
- antibiotic
Antibiotic code in AMR::ab format
0.002:512Counts of isolates in each concentration "bin"
- Distributions
see EUCAST documentation below
- Observations
Number of observations
(T)ECOFFsee EUCAST documentation below
Confidence intervalsee EUCAST documentation below
Source
EUCAST https://www.eucast.org/mic_and_zone_distributions_and_ecoffs
These data have (or this document, presentation or video has) been produced in part under ECDC service contracts and made available by EUCAST at no cost to the user and can be accessed on the EUCAST website www.eucast.org. The views and opinions expressed are those of EUCAST at a given point in time. EUCAST recommendations are frequently updated and the latest versions are available at www.eucast.org.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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