Description Usage Arguments Details Value References See Also Examples

View source: R/hierarchicalFDR.R

Select groups from hierarchical testing procedure with FDR control (hierarchicalFDR)

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`out` |
output of hierarchicalFDR function |

`alpha` |
control level for test |

`global` |
if FALSE the provided alpha is the desired level control for each family. |

`outer` |
if TRUE, the FDR is controlled only on outer node (rejected groups without rejected children) . If FALSE, it is controlled on the full tree. |

See the reference for mode details about the method.

If each family is controlled at a level alpha, we have the following control : FDR control of full tree : alpha * delta * 2 (delta = 1.44) FDR control of outer node : alpha * L * delta * 2 (delta = 1.44)

a list containing :

- toSel
vector of boolean. TRUE if the group is selected

- groupId
Names of groups

- local.alpha
control level for each family of hypothesis

- global.alpha
control level for the tree (full tree or outer node)

Yekutieli, Daniel. "Hierarchical False Discovery Rate-Controlling Methodology." Journal of the American Statistical Association 103.481 (2008): 309-16.

hierarchicalFDR

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