read.sanger: Imports a .ab1 file from Applied Biosystems corresponding to...
In MLPA: Multiplex Ligation-Dependent Probe Amplification Data Analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Description
This function parses a FSA/AB1 file using read.fsa, with few adjustments for Sanger sequencing experiments.
Usage
1
read.sanger(file, channelOrder = NULL, guess.threshold = 0.3)
Arguments
file
Single character value, the name and path of the file to parse.
channelOrder
Character vector, providing 'A', 'C', 'G' and 'T' in the order of the used channels. If NULL, a guess will be attempted based on the called sequence.
guess.threshold
Single numeric value, setting the tolerance to use for channel guessing validation. Lower values mean higher chances to get an error for channel guessing failure.
Value
A S3 object of class fsa
Author(s)
Sylvain Mareschal
See Also
MLPA documentation built on May 2, 2020, 1:06 a.m.
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Description Usage Arguments Value Author(s) See Also
Description
This function parses a FSA/AB1 file using read.fsa, with few adjustments for Sanger sequencing experiments.
Usage
1 | read.sanger(file, channelOrder = NULL, guess.threshold = 0.3)
|
Arguments
file |
Single character value, the name and path of the file to parse. |
channelOrder |
Character vector, providing 'A', 'C', 'G' and 'T' in the order of the used channels. If |
guess.threshold |
Single numeric value, setting the tolerance to use for channel guessing validation. Lower values mean higher chances to get an error for channel guessing failure. |
Value
A S3 object of class fsa
Author(s)
Sylvain Mareschal
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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