QTLDetectionExample: QTL Detection Example

In MM4LMM: Inference of Linear Mixed Models Through MM Algorithm

QTL Detection Example

Description

This corresponds to (a sample of) the dataset presented in Rincent et al. (2014).

Usage

data("QTLDetectionExample")

Format

The format is: List of 3

Phenotype

Named num [1:259]

Genotype

int [1:259,1:10]

Kinship

num [1:259,1:259]

Details

The list contains three elements:

• Phenotype: a numeric vector containing phenotypes of individuals

• Genotype: a matrix containing the genotypes of indviduals over 10 biallelic markers

• Kinship: a matrix of simple relatedness coefficients between individuals

Source

https://link.springer.com/article/10.1007/s00122-014-2379-7

References

Rincent, R., Nicolas, S., Bouchet, S., Altmann, T., Brunel, D., Revilla, P., ... & Schipprack, W. (2014). Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production. Theoretical and applied genetics, 127(11), 2313-2331.

Examples

data(QTLDetectionExample)
names(QTLDetectionExample)
## maybe str(QTLDetectionExample) ; plot(QTLDetectionExample) ...

MM4LMM documentation built on Oct. 30, 2024, 5:06 p.m.