VarianceComponentExample: Variance Component Example

In MM4LMM: Inference of Linear Mixed Models Through MM Algorithm

Variance Component Example

Description

This corresponds to (a sample of) the dataset presented in Giraud et al. (2017).

Usage

data("VarianceComponentExample")

Format

The format is: List of 3

Data

'data.frame': 432 obs. of 5 variables

Trial

a factor with 2 levels

CodeHybrid

a factor with 177 levels

CodeDent

a factor with 116 levels

CodeFlint

a factor with 122 levels

Trait

a numeric vector

KinshipD

num [1:116,1:116]

KinshipF

num [1:122,1:122]

Details

The list contains three elements:

• Data: a data frame containing the information about hybrids (trials, hybrid names, dent parental lines, flint parental lines and phenotypes)

• KinshipD: a matrix of simple relatedness coefficients between dent lines

• KinshipF: a matrix of simple relatedness coefficients between flint lines

Source

\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1534/genetics.117.300305")}

References

Giraud, H., Bauland, C., Falque, M., Madur, D., Combes, V., Jamin, P., ... & Blanchard, P. (2017). Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups. Genetics, 207(3), 1167-1180.

Examples

data(VarianceComponentExample)
names(VarianceComponentExample)
## maybe str(VarianceComponentExample) ; plot(VarianceComponentExample) ...

MM4LMM documentation built on Oct. 30, 2024, 5:06 p.m.