MPSEM: Modeling Phylogenetic Signals using Eigenvector Maps
Version 0.3-1

Computational tools to represent phylogenetic signals using adapted eigenvector maps.

Browse man pages Browse package API and functions Browse package files

AuthorGuillaume Guenard, with contribution from Pierre Legendre
Date of publication2015-12-17 16:22:15
MaintainerGuillaume Guenard <guillaume.guenard@gmail.com>
LicenseGPL (>= 2)
Version0.3-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MPSEM")

Man pages

graph-class: Graph class and methods
GraphFunctions: Graph creation and manipulation functions
lmutils: Linear modelling utility functions
MPSEM-package: Modeling Phylogenetic Signals using Eigenvector Maps
OUSim: Simulates the evolution of a quantitative trait.
PEM: Phylogenetic Eigenvector Map
PEM-class: Class and methods for Phylogenetic Eigenvector Maps (PEM)

Functions

EvolveOptimMarkovTree Man page
Locations2PEMscores Man page
OUvar Man page
PEM-class Man page
PEM.build Man page
PEM.fitSimple Man page
PEM.forcedSimple Man page
PEM.updater Man page
PEMInfluence Man page
PEMvar Man page
PEMweights Man page
Phylo2DirectedGraph Man page
TraitOUsimTree Man page
TraitVarGraphSim Man page
add.edge Man page
add.vertex Man page
as.data.frame.PEM Man page
collapse.vertex Man page
getAncGraphLocations Man page
getGraphLocations Man page
graph-class Man page
graph-functions Man page
lmforwardsequentialAICc Man page
lmforwardsequentialsidak Man page
pop.graph Man page
predict.PEM Man page
print.PEM Man page
print.graph Man page
rm.edge Man page
rm.vertex Man page
trait-simulator Man page
EvolveOptimMarkovTree Source code
Locations2PEMscores Source code
MPSEM Man page
MPSEM-package Man page
OUvar Source code
PEM.build Source code
PEM.fitSimple Source code
PEM.forcedSimple Source code
PEM.updater Source code
PEMInfluence Source code
PEMvar Source code
PEMweights Source code
Phylo2DirectedGraph Source code
TraitOUsimTree Source code
TraitVarGraphSim Source code
add.edge Source code
add.vertex Source code
as.data.frame.PEM Source code
collapse.vertex Source code
getAncGraphLocations Source code
getGraphLocations Source code
lmforwardsequentialAICc Source code
lmforwardsequentialsidak Source code
pop.graph Source code
predict.PEM Source code
print.PEM Source code
print.graph Source code
rm.edge Source code
rm.vertex Source code

Files

inst
inst/doc
inst/doc/MPSEM.R
inst/doc/MPSEM.pdf
inst/doc/MPSEM.Rnw
src
src/MPSEM.c
src/MPSEM.h
NAMESPACE
R
R/MPSEM.R
R/OUSim.R
R/GraphFunctions.R
R/PEM.R
R/lmutils.R
vignettes
vignettes/PEM_with_MPSEM.bib
vignettes/MPSEM.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/OUSim.Rd
man/graph-class.Rd
man/lmutils.Rd
man/MPSEM-package.Rd
man/GraphFunctions.Rd
man/PEM-class.Rd
man/PEM.Rd
MPSEM documentation built on May 20, 2017, 1:30 a.m.