graph-class: Class and Method for Directed Graphs

In MPSEM: Modelling Phylogenetic Signals using Eigenvector Maps

Class and Method for Directed Graphs

Description

Class and methods to handle MPSEM graphs.

Usage

## S3 method for class 'graph'
print(x, ...)

Arguments

x	An object of graph-class.
...	Additional parameters to be passed to the method. Currently ignored.

Format

A graph-class object contains:

edge

A list whose first two unnamed members are the indices of the origin and destination vertices. Additional members must be named and are additional edge properties (e.g. length).

vertex

A list that optionally contains vertex properties, if any (or an empty list if none).

Details

Prints user-relevant information about the graph: number of edges and vertices, edge and vertex labels, addition edge properties and vertex properties.

Functions

• print(graph): Print Graph

  A print method for graph-class objects.

Author(s)

Guillaume Guénard [aut, cre] (ORCID: <https://orcid.org/0000-0003-0761-3072>), Pierre Legendre [ctb] (ORCID: <https://orcid.org/0000-0002-3838-3305>) Maintainer: Guillaume Guénard <[e-mail]>

References

Guénard, G., Legendre, P., and Peres-Neto, P. 2013. Phylogenetic eigenvector maps: a framework to model and predict species traits. Methods in Ecology and Evolution 4: 1120-1131

See Also

graph-functions.

MPSEM documentation built on June 8, 2025, 1:56 p.m.