CitrobacterRKImetadata: Metadata of mass spectra corresponding to the bacterial...

In MSclassifR: Automated Classification of Mass Spectra

Metadata of mass spectra corresponding to the bacterial species Citrobacter sp. from The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra

Description

Metadada of the CitrobacterRKIspectra list of mass spectra.

Usage

data("CitrobacterRKImetadata", package = "MSclassifR")

Format

A data frame with 14 rows (each corresponding to a mass spectrum), and five columns that contain (in order): the strain name, the species name, the spot, a sample number and the name of the strain associated with the spot.

Details

The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra contains raw mass spectra. Only mass spectra of the Citrobacter bacterial species were collected. Metadata were manually reported from raw data.

Source

The raw data were downloaded from this link : https://zenodo.org/record/163517#.YIkWiNZuJCp. The dataset focuses only on mass spectra from Citrobacter.

References

Lasch, Peter, Stammler, Maren, & Schneider, Andy. (2018). Version 3 (20181130) of the MALDI-TOF Mass Spectrometry Database for Identification and Classification of Highly Pathogenic Microorganisms from the Robert Koch-Institute (RKI) [Data set]. Zenodo.\Sexpr[results=rd]{tools:::Rd_expr_doi("http://doi.org/10.5281/zenodo.163517")}

MSclassifR documentation built on Aug. 9, 2023, 9:08 a.m.