CitrobacterRKIspectra: Mass spectra corresponding to the bacterial species...

In MSclassifR: Automated Classification of Mass Spectra

Mass spectra corresponding to the bacterial species Citrobacter sp. from The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra

Description

Mass spectra of the CitrobacterRKIspectra dataset.

Usage

data("CitrobacterRKIspectra", package = "MSclassifR")

#####
#Plotting the first mass spectrum
#library("MSclassifR")
#PlotSpectra(SpectralData=CitrobacterRKIspectra[[1]],absx = "ALL", Peaks = NULL, 
#            Peaks2 = NULL, col_spec = 1, col_peak = 2, shape_peak = 3,
#            col_peak2 = 2, shape_peak2 = 2)

Format

A list that contains 14 objects of class S4 corresponding each to a each mass spectrum.

Details

The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra contains raw mass spectra. Only mass spectra of the Citrobacter bacterial species were collected.

Source

The raw data were downloaded from this link : https://zenodo.org/record/163517#.YIkWiNZuJCp. The dataset focuses only on mass spectra from Citrobacter.

References

Lasch, Peter, Stammler, Maren, & Schneider, Andy. (2018). Version 3 (20181130) of the MALDI-TOF Mass Spectrometry Database for Identification and Classification of Highly Pathogenic Microorganisms from the Robert Koch-Institute (RKI) [Data set]. Zenodo.\Sexpr[results=rd]{tools:::Rd_expr_doi("http://doi.org/10.5281/zenodo.163517")}

MSclassifR documentation built on Aug. 9, 2023, 9:08 a.m.