MXM: Discovering Multiple, Statistically-Equivalent Signatures

Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.

AuthorIoannis Tsamardinos, Vincenzo Lagani, Giorgos Athineou, Michail Tsagris, Giorgos Borboudakis, Anna Roumpelaki
Date of publication2016-12-20 11:46:31
MaintainerMichail Tsagris <mtsagris@csd.uoc.gr>
LicenseGPL-2
Version0.9.7
http://mensxmachina.org

View on CRAN

Man pages

auc: ROC and area under the curve

beta.mod: Beta regression

beta.regs: Many simple beta regressions.

bic.fsreg: Variable selection in regression models with forward...

bic.glm.fsreg: Variable selection in generalised linear models with forward...

bs.reg: Variable selection in regression models with backward...

censIndCR: Conditional independence test for survival data

condi: Fisher conditional independence test for continuous class...

cv.ses: Cross-Validation for SES and MMPC

dag2eg: Transforms a DAG into an essential graph

equivdags: Check Markov equivalence of two DAGs

findDescendants: Returns and plots, if asked, the descendants or ancestors of...

fs.reg: Variable selection in regression models with forward...

generatefolds: Generate random folds for cross-validation

glm.bsreg: Variable selection in generalised linear regression models...

glm.fsreg: Variable selection in generalised linear regression models...

gSquare: G-square conditional independence test for discrete data

lm.fsreg: Variable selection in linear regression models with forward...

mammpc.output-class: Class '"mammpc.output"'

ma.ses: ma.ses: Feature selection algorithm for identifying multiple...

mases.output-class: Class '"mases.output"'

mb: Returns and plots, if asked, the Markov blanket of a node (or...

mmhc.skel: The skeleton of a Bayesian network as produced by MMHC

mmmb: Max-min Markov blanket algorithm

MMPCoutput-class: Class '"MMPCoutput"'

mmpc.path: MMPC solution paths for many combinations of hyper-parameters

MMPC.temporal.output-class: Class '"MMPC.temporal.output"'

MXMCondIndTests: MXM Conditional independence tests

MXM-internal: Internal MXM Functions

MXM-package: This is an R package that currently implements feature...

nei: Returns and plots, if asked, the node(s) and their...

partialcor: Partial correlation

pc.or: The orientations part of the PC algorithm.

pc.skel: The skeleton of a Bayesian network produced by the PC...

permcor: Permutation based p-value for the Pearson correlation...

plotnetwork: Interactive plot of an (un)directed graph

rdag: Simulation of data from DAG (directed acyclic graph)

reg.fit: Regression modelling

ridge.plot: Ridge regression

ridge.reg: Ridge regression

ridgereg.cv: Cross validation for the ridge regression

SES: SES: Feature selection algorithm for identifying multiple...

ses.model: Regression model(s) obtained from SES or MMPC

SESoutput-class: Class '"SESoutput"'

SES.temporal: SES.temporal: Feature selection algorithm for identifying...

SES.temporal.output-class: Class '"SES.temporal.output"'

tc.plot: Plot of longitudinal data

testIndBeta: Beta regression conditional independence test for...

testIndBinom: Binomial regression conditional independence test for success...

testIndClogit: Conditional independence test based on conditional logistic...

testIndFisher: Fisher and Spearman conditional independence test for...

testIndGLMM: Linear mixed models conditional independence test for...

testIndLogistic: Conditional independence test for binary, categorical or...

testIndPois: Regression conditional independence test for discrete...

testIndReg: Linear (and non-linear) regression conditional independence...

testIndSpeedglm: Conditional independence test for continuous, binary and...

transitiveClosure: Returns the transitive closure of an adjacency matrix

undir.path: Undirected path(s) between two nodes

zip.mod: Zero inflated Poisson regression

zip.regs: Many simple zero inflated Poisson regressions.

Files in this package

MXM
MXM/inst
MXM/inst/CITATION
MXM/inst/doc
MXM/inst/doc/article.pdf
MXM/inst/doc/article.ltx
MXM/NAMESPACE
MXM/R
MXM/R/beta.reg.R MXM/R/SES.R MXM/R/zip.reg.R MXM/R/testIndLogistic.R MXM/R/rdag.R MXM/R/permcor.R MXM/R/lm.fsreg.R MXM/R/bic.zipfsreg.R MXM/R/testIndClogit.R MXM/R/zip.regs.R MXM/R/censIndCR.R MXM/R/ma.mmpc.R MXM/R/transitiveClosure.R MXM/R/cvses.par.R MXM/R/bic.glm.fsreg.R MXM/R/SES.temporal.R MXM/R/pc.or.R MXM/R/glm.fsreg.R MXM/R/mmpc.path.R MXM/R/topological_sort.R MXM/R/bic.fsreg.R MXM/R/testIndIGreg.R MXM/R/testIndGLMM.R MXM/R/testIndSpearman.R MXM/R/beta.mod.R MXM/R/testIndReg.R MXM/R/testIndZIP.R MXM/R/cv.mmpc.R MXM/R/cvmmpc.par.R MXM/R/testIndRQ.R MXM/R/MMPC.R MXM/R/findDescendants.R MXM/R/censIndWR.R MXM/R/bs.reg.R MXM/R/lm.fsreg_2.R MXM/R/zip.mod.R MXM/R/ridge.reg.R MXM/R/gSquare.R MXM/R/generatefolds.R MXM/R/dag2eg.R MXM/R/ma.ses.R MXM/R/testIndFisher.R MXM/R/MMPC.temporal.R MXM/R/zip.fsreg.R MXM/R/mammpc.output_script.R MXM/R/glm.bsreg.R MXM/R/bic.betafsreg.R MXM/R/condi.R MXM/R/testIndMVreg.R MXM/R/mmpc.model.R MXM/R/SES.temporal.opoutput_script.R MXM/R/equivdags.R MXM/R/findAncestors.R MXM/R/testIndPois.R MXM/R/ses.model.R MXM/R/testIndNB.R MXM/R/undir.path.R MXM/R/MMPCoutput_script.R MXM/R/MMPC.temporal.output_script.R MXM/R/dag_to_eg.R MXM/R/testIndSpeedglm.R MXM/R/mases.output_script.R MXM/R/pc.con.R MXM/R/ridge.plot.R MXM/R/vara.R MXM/R/zip.bsreg.R MXM/R/testIndBinom.R MXM/R/ridgereg.cv.R MXM/R/censIndER.R MXM/R/pc.skel.R MXM/R/partialcor.R MXM/R/glm.fsreg_2.R MXM/R/mb.R MXM/R/plotnetwork.R MXM/R/beta.regs.R MXM/R/nei.R MXM/R/reg.fit.R MXM/R/tc.plot.R MXM/R/cat.ci.R MXM/R/beta.fsreg.R MXM/R/testIndBeta.R MXM/R/cv.ses.R MXM/R/auc.R MXM/R/fs.reg.R MXM/R/SESoutput_script.R MXM/R/beta.bsreg.R MXM/R/mmhc.skel.R MXM/R/mmmb.R
MXM/vignettes
MXM/vignettes/claim2_boxplot_ses_coefvar.eps
MXM/vignettes/claim2_boxplot_ses_coefvar-eps-converted-to.pdf
MXM/vignettes/athineou.bib
MXM/vignettes/boxplot_perf_ses_lasso-eps-converted-to.pdf
MXM/vignettes/JSS.bib
MXM/vignettes/article.ltx
MXM/vignettes/jsslogo.jpg
MXM/vignettes/boxplot_perf_ses_lasso.eps
MXM/MD5
MXM/build
MXM/build/vignette.rds
MXM/DESCRIPTION
MXM/man
MXM/man/dag2eg.Rd MXM/man/SES.temporal.output-class.Rd MXM/man/gSquare.Rd MXM/man/censIndCR.Rd MXM/man/testIndGLMM.Rd MXM/man/testIndBinom.Rd MXM/man/mammpc.output-class.Rd MXM/man/beta.regs.Rd MXM/man/rdag.Rd MXM/man/findDescendants.Rd MXM/man/zip.mod.Rd MXM/man/MXMCondIndTests.Rd MXM/man/testIndBeta.Rd MXM/man/glm.fsreg.Rd MXM/man/bic.fsreg.Rd MXM/man/ses.model.Rd MXM/man/equivdags.Rd MXM/man/testIndClogit.Rd MXM/man/testIndPois.Rd MXM/man/generatefolds.Rd MXM/man/partialcor.Rd MXM/man/zip.regs.Rd MXM/man/MMPCoutput-class.Rd MXM/man/MXM-package.Rd MXM/man/tc.plot.Rd MXM/man/auc.Rd MXM/man/testIndSpeedglm.Rd MXM/man/MMPC.temporal.output-class.Rd MXM/man/testIndLogistic.Rd MXM/man/bs.reg.Rd MXM/man/transitiveClosure.Rd MXM/man/bic.glm.fsreg.Rd MXM/man/condi.Rd MXM/man/reg.fit.Rd MXM/man/lm.fsreg.Rd MXM/man/testIndReg.Rd MXM/man/ridge.plot.Rd MXM/man/ridgereg.cv.Rd MXM/man/ridge.reg.Rd MXM/man/cv.ses.Rd MXM/man/fs.reg.Rd MXM/man/SES.Rd MXM/man/mmmb.Rd MXM/man/pc.or.Rd MXM/man/undir.path.Rd MXM/man/SESoutput-class.Rd MXM/man/permcor.Rd MXM/man/nei.Rd MXM/man/mmpc.path.Rd MXM/man/beta.mod.Rd MXM/man/SES.temporal.Rd MXM/man/MXM-internal.Rd MXM/man/mmhc.skel.Rd MXM/man/plotnetwork.Rd MXM/man/ma.ses.Rd MXM/man/mb.Rd MXM/man/glm.bsreg.Rd MXM/man/testIndFisher.Rd MXM/man/mases.output-class.Rd MXM/man/pc.skel.Rd

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All documentation is copyright its authors; we didn't write any of that.