MapGAM: Mapping Smoothed Effect Estimates from Individual-Level Data
Version 1.0

Contains functions for mapping odds ratios, hazard ratios, or other effect estimates using individual-level data such as case-control study data, using generalized additive models (GAMs) or Cox models for smoothing with a two-dimensional predictor (e.g., geolocation or exposure to chemical mixtures) while adjusting linearly for confounding variables, using methods described by Kelsall and Diggle (1998), Webster at al. (2006), and Bai et al. (submitted). Includes convenient functions for mapping point estimates and confidence intervals, efficient control sampling, and permutation tests for the null hypothesis that the two-dimensional predictor is not associated with the outcome variable (adjusting for confounders).

AuthorLu Bai, Scott Bartell, Robin Bliss, and Veronica Vieira
Date of publication2016-09-03 16:39:06
MaintainerScott Bartell <sbartell@uci.edu>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MapGAM")

Getting started

Package overview

Popular man pages

beertweets: Geocoded Tweets with Beer Indicator
dls: Calculating derivatives of partial likelihood for Cox...
MAdata: Synthetic Case-Control Data for Massachusetts
MapGAM-package: Mapping Smoothed Effect Estimates from Individual-Level...
modgam: Fit a Generalized Additive Model (GAM) with a Two-Dimensional...
optspan: Determine the Optimal Span Size for modgam
trimdata: Trim a Data Set To Map Boundaries
See all...

All man pages Function index File listing

Man pages

beertweets: Geocoded Tweets with Beer Indicator
CAdata: Deidentified survival data for California
CAgrid: A grid on state of California
CAmap: Map of California
colormap: Maps Predicted Values and Clusters on a two-dimentional map
dls: Calculating derivatives of partial likelihood for Cox...
gamcox: Fit a Cox Additive Model with a Two-Dimensional Smooth
MAdata: Synthetic Case-Control Data for Massachusetts
MAmap: Map of Massachusetts
MapGAM-package: Mapping Smoothed Effect Estimates from Individual-Level...
MapGAM.version: Revision dates for MapGAM functions
modgam: Fit a Generalized Additive Model (GAM) with a Two-Dimensional...
mypredict.gam: Prediction method for GAM fits
optspan: Determine the Optimal Span Size for modgam
plot.modgam: Maps Predicted Values and Clusters for modgam Objects
predgrid: Create a Grid and Clip it to a Map and Data Bounds
predict.gamcox: Prediction method for GAMCOX fits
print.gamcox: Print gamcox Objects
print.modgam: Print modgam Objects
sampcont: Unmatched Control Sampling
toformula: Build a formula based on data for 'modgam' function
trimdata: Trim a Data Set To Map Boundaries

Functions

CAdata Man page
CAgrid Man page
CAmap Man page
MAdata Man page
MAmap Man page
MapGAM Man page
MapGAM-package Man page
MapGAM.version Man page Source code
beertweets Man page
colormap Man page Source code
dls Man page Source code
gamcox Man page Source code
gamcox.fit Man page Source code
modgam Man page Source code
mypredict.gam Man page Source code
optspan Man page Source code
plot.modgam Man page Source code
predgrid Man page Source code
predict.gamcox Man page Source code
print.gamcox Man page Source code
print.modgam Man page Source code
sampcont Man page Source code
toformula Man page Source code
trimdata Man page Source code

Files

NAMESPACE
data
data/CAmap.rda
data/beertweets.rda
data/CAgrid.rda
data/MAmap.rda
data/CAdata.rda
data/MAdata.rda
data/datalist
R
R/trimdata.R
R/dls.R
R/colormap.R
R/gamcox.fit.R
R/sampcont.R
R/optspan.R
R/predict.gamcox.R
R/gamcox.R
R/predgrid.R
R/modgam.R
R/print.gamcox.R
R/mypredict.gam.R
R/toformula.R
R/plot.modgam.R
R/print.modgam.R
R/MapGAM.version.R
MD5
DESCRIPTION
ChangeLog
man
man/optspan.Rd
man/colormap.Rd
man/sampcont.Rd
man/CAgrid.Rd
man/gamcox.Rd
man/beertweets.Rd
man/print.gamcox.Rd
man/CAmap.Rd
man/print.modgam.Rd
man/toformula.Rd
man/CAdata.Rd
man/MapGAM-package.Rd
man/MapGAM.version.Rd
man/mypredict.gam.Rd
man/MAmap.Rd
man/modgam.Rd
man/plot.modgam.Rd
man/predgrid.Rd
man/predict.gamcox.Rd
man/trimdata.Rd
man/MAdata.Rd
man/dls.Rd
MapGAM documentation built on May 19, 2017, 4:31 p.m.

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