log2FC: Get log2FC Data
In MetAlyzer: Read and Analyze 'MetIDQ™' Software Output Files

log2FC

R Documentation

Get log2FC Data

Description

This function returns the tibble "log2FC".

Usage

log2FC(metalyzer_se)

Arguments

metalyzer_se

SummarizedExperiment

Examples

metalyzer_se <- MetAlyzer_dataset(file_path = example_mutation_data_xl())
metalyzer_se <- filterMetabolites(
  metalyzer_se,
  drop_metabolites = "Metabolism Indicators"
)
metalyzer_se <- renameMetaData(
  metalyzer_se,
  Mutant_Control = "Sample Description"
)

metalyzer_se <- calculate_log2FC(
  metalyzer_se,
  categorical = "Mutant_Control",
  impute_perc_of_min = 0.2,
  impute_NA = TRUE
)

log2FC(metalyzer_se)

MetAlyzer documentation built on April 3, 2025, 6:32 p.m.