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MetaComp: EDGE Taxonomy Assignments Visualization
Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
Getting started
Browse package contents
Package details |
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| Author | Pavel Senin [aut, cre] |
| Maintainer | Pavel Senin <senin@hawaii.edu> |
| License | GPL-2 |
| Version | 1.1.2 |
| URL | https://github.com/seninp-bioinfo/MetaComp |
| Package repository | View on CRAN |
| Installation |
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