MetaComp: EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Getting started

Package details

AuthorPavel Senin [aut, cre]
MaintainerPavel Senin <[email protected]>
LicenseGPL-2
Version1.1.2
URL https://github.com/seninp-bioinfo/MetaComp
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("MetaComp")

Try the MetaComp package in your browser

Any scripts or data that you put into this service are public.

MetaComp documentation built on June 19, 2018, 1:03 a.m.