MetaCycle: Evaluate Periodicity in Large Scale Data

Provides two functions-meta2d and meta3d for detecting rhythmic signals from time-series datasets. For analyzing time-series datasets without individual information, 'meta2d' is suggested, which could incorporates multiple methods from ARSER, JTK_CYCLE and Lomb-Scargle in the detection of interested rhythms. For analyzing time-series datasets with individual information, 'meta3d' is suggested, which takes use of any one of these three methods to analyze time-series data individual by individual and gives out integrated values based on analysis result of each individual.

Install the latest version of this package by entering the following in R:
install.packages("MetaCycle")
AuthorGang Wu [aut, cre], Ron Anafi [aut, ctb], John Hogenesch [aut, ctb], Michael Hughes [aut, ctb], Karl Kornacker [aut, ctb]
Date of publication2015-12-05 00:08:22
MaintainerGang Wu <wggucas@gmail.com>
LicenseGPL (>= 2)
Version1.1.0

View on CRAN

Files

inst
inst/doc
inst/doc/implementation.Rmd
inst/doc/implementation.html
inst/doc/implementation.R
NAMESPACE
data
data/cycVignettesAMP.rda
data/cycHumanBloodData.rda
data/cycMouseLiverProtein.rda
data/cycSimu4h2d.rda
data/cycHumanBloodDesign.rda
data/cycYeastCycle.rda
data/cycMouseLiverRNA.rda
R
R/metaSubF.R R/datasetsinfo.R R/meta2dSubF.R R/meta3dMainF.R R/ARS.R R/meta3dSubF.R R/LS.R R/package.R R/meta2dMainF.R R/JTKv3.1p.R
vignettes
vignettes/implementation.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/cycHumanBloodDesign.Rd man/MetaCycle.Rd man/cycVignettesAMP.Rd man/cycHumanBloodData.Rd man/meta3d.Rd man/cycMouseLiverProtein.Rd man/cycSimu4h2d.Rd man/cycMouseLiverRNA.Rd man/meta2d.Rd man/cycYeastCycle.Rd

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