MetaCycle: Evaluate Periodicity in Large Scale Data

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Provides two functions-meta2d and meta3d for detecting rhythmic signals from time-series datasets. For analyzing time-series datasets without individual information, 'meta2d' is suggested, which could incorporates multiple methods from ARSER, JTK_CYCLE and Lomb-Scargle in the detection of interested rhythms. For analyzing time-series datasets with individual information, 'meta3d' is suggested, which takes use of any one of these three methods to analyze time-series data individual by individual and gives out integrated values based on analysis result of each individual.

Author
Gang Wu [aut, cre], Ron Anafi [aut, ctb], John Hogenesch [aut, ctb], Michael Hughes [aut, ctb], Karl Kornacker [aut, ctb]
Date of publication
2015-12-05 00:08:22
Maintainer
Gang Wu <wggucas@gmail.com>
License
GPL (>= 2)
Version
1.1.0

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Man pages

cycHumanBloodData
cycHumanBloodData
cycHumanBloodDesign
cycHumanBloodDesign
cycMouseLiverProtein
cycMouseLiverProtein
cycMouseLiverRNA
cycMouseLiverRNA
cycSimu4h2d
cycSimu4h2d
cycVignettesAMP
cycVignettesAMP
cycYeastCycle
cycYeastCycle
meta2d
Detect rhythmic signals from time-series datasets with...
meta3d
Detect rhythmic signals from time-series datasets with...
MetaCycle
MetaCycle Evaluate periodicity in large scale data

Files in this package

MetaCycle
MetaCycle/inst
MetaCycle/inst/doc
MetaCycle/inst/doc/implementation.Rmd
MetaCycle/inst/doc/implementation.html
MetaCycle/inst/doc/implementation.R
MetaCycle/NAMESPACE
MetaCycle/data
MetaCycle/data/cycVignettesAMP.rda
MetaCycle/data/cycHumanBloodData.rda
MetaCycle/data/cycMouseLiverProtein.rda
MetaCycle/data/cycSimu4h2d.rda
MetaCycle/data/cycHumanBloodDesign.rda
MetaCycle/data/cycYeastCycle.rda
MetaCycle/data/cycMouseLiverRNA.rda
MetaCycle/R
MetaCycle/R/metaSubF.R
MetaCycle/R/datasetsinfo.R
MetaCycle/R/meta2dSubF.R
MetaCycle/R/meta3dMainF.R
MetaCycle/R/ARS.R
MetaCycle/R/meta3dSubF.R
MetaCycle/R/LS.R
MetaCycle/R/package.R
MetaCycle/R/meta2dMainF.R
MetaCycle/R/JTKv3.1p.R
MetaCycle/vignettes
MetaCycle/vignettes/implementation.Rmd
MetaCycle/MD5
MetaCycle/build
MetaCycle/build/vignette.rds
MetaCycle/DESCRIPTION
MetaCycle/man
MetaCycle/man/cycHumanBloodDesign.Rd
MetaCycle/man/MetaCycle.Rd
MetaCycle/man/cycVignettesAMP.Rd
MetaCycle/man/cycHumanBloodData.Rd
MetaCycle/man/meta3d.Rd
MetaCycle/man/cycMouseLiverProtein.Rd
MetaCycle/man/cycSimu4h2d.Rd
MetaCycle/man/cycMouseLiverRNA.Rd
MetaCycle/man/meta2d.Rd
MetaCycle/man/cycYeastCycle.Rd